Results for "Sizes"
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...d help to choose parameters for downstream analysis. We demonstrate its accuracy on 324 simulated and 16 real datasets with a wide range in genome sizes, heterozygosity levels, and e...2367 days ago
BIMA V3: an aligner customized for mate pair library sequencing
...alignment of mate pair read pairs to a reference genome is a challenging and time consuming process for most NGS alignment programs. Large insert sizes, introduction of library prep...2720 days ago
- ...ased on enhanced suffix arrays. This gives a much larger flexibility concerning the choice of the k-mer size. Tallymer can process large data sizes of several billion bases. We...
2292 days ago
- ...ling reads to contigs and scaffolds. Instead of using single-end reads to construct contig, PERGA uses paired-end reads and different read overlap sizes from O ≥ Omax to Omin to reso...
2182 days ago
AlignQC: A tool for assessing an alignment, and generating reports that are easy to share
Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and rarefraction curve analysis. The most basic ana...2120 days ago
visNetwork: an R package for network visualization, using vis.js javascript library
...ses all the features available in vis.js API, and even more with special features for R : easy to use custom shapes, styles, colors, sizes, … works smooth on an...1964 days ago
G-NEST: The Gene NEighborhood Scoring Tool
The Gene NEighborhood Scoring Tool (G-NEST) combines genomic location, gene expression, and evolutionary sequence conservation data to score putative gene neighborhoods across all window sizes. Primary author of final code = William F. Martin. Example data files are in the separate repository.1339 days ago
- ...LARGER queries! ElasticBLAST can search query sets that have hundreds to millions of sequences and against BLAST databases of all sizes. 2. ElasticBLAST is FASTER...
628 days ago
