1117 days ago
2809 days ago
2778 days ago
2717 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
...th user-defined criteria (E-Value, identity, coverage, alignment length, etc.), Does not require any additional hardware, since it is a software solution. It is easy to install, cost-...2361 days ago
AIRVF: a filtering toolbox for precise variant calling in Ion Torrent sequencing
...material showed up to ∼98% reduction of false variants when combined to conventional public pipelines and ∼48% to the in-house commercial solution, with a minimal loss of sensi...2340 days ago
MITObim - mitochondrial baiting and iterative mapping
...ime down the line. I provide further examples here as Jupyter notebooks. Get in touch if you feel like sharing your particular MITObim solution and I'd be happy to put it up...2203 days ago
Rainbow: an integrated tool for efficient clustering and assembling RAD-seq reads
Rainbow is developed to provide an ultra-fast and memory-efficient solution to clustering and assembling short reads produced by RAD-seq. First, Rainbow clusters reads using a spaced s...2039 days ago
2013 days ago
MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons
...espect to their AA translation while allowing NT sequences to contain multiple frameshifts and/or stop codons. MACSE is hence the first automatic solution to align protein-coding gene...1917 days ago