Results for "Space"
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VariantBam: Filtering and profiling of next-generational sequencing data using region-specific rules
VariantBam is a tool to extract/count specific sets of sequencing reads from next-generational sequencing files. To save money, disk space and I/O, one may not want to store an entir...2050 days ago
SiLiX: implements an ultra-efficient algorithm for the clustering of homologous sequences
...rk. A very efficient algorithm, based on the Disjoint Sets Data Structure, allows the computation of sequence families with low time and space requirements. A parallel ver...1981 days ago
IQ-TREE: Efficient software for phylogenomic inference
...th similar computing time IQ-TREE found higher likelihoods between 62.2% and 87.1% of the studied alignments, thus efficiently exploring the tree-space. If we use the IQ-TREE stoppi...1913 days ago
TRITEX sequence assembly pipeline for Triticeae genomes
...hexaploid wheat (T. aestivum) with reasonable results: super-scaffold N50 values in the range of dozens of Mb and pseudomolecules with better gene space representation than a BAC-by-...1730 days ago
RosettaAntibodyDesign (RAbD): A general framework for computational antibody design
...which a user can easily tailor the run to their project needs. The algorithm is meant to sample the diverse sequence, structure, and binding space of an antibody-antigen comple...1333 days ago
Kmer: a suite of tools for DNA sequence analysis
...Meryl: An out-of-core k-mer counter. The amount of sequence that can be processed for any size k depends only on the amount of free disk space....1001 days ago
PuffAligner: a fast, efficient and accurate aligner based on the Pufferfish index
...ligner requires considerably less memory to construct its index and align reads. PuffAligner strikes a desirable balance with respect to the time, space and accuracy tradeoffs made b...755 days ago
Quip: Aggressive compression of FASTQ, SAM and BAM files.
This will help us to reduce the amount of drive space we take up and decrease data transfer times Quip compresses next-generation sequencing data with extreme prejudice. It supports...722 days ago
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