3944 days ago
List of In-silico Binding Site Prediction Tools
...structures. To identify protein binding sites, we model the shape of a split pocket induced by a binding l...a purely geometric method to extract site-specific spatial patterns of split pockets as templates to match...3740 days ago
Perl one-liner for bioinformatician !!!
...‘x’ 50 character longperl -le 'print join ", ", map { ord } split //, "hello world"'#Will print...perl-oneliners-for.html http://bioexpressblog.wordpress.com/2013/04/05/split-multi-fasta-sequence-file/3625 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
..., post-alignment tool Input: pileupformat (Maq or Samtools) Output: SV-M Description: Structural Variant Machine - predicts indels, uses split read alignment profiles, vali...2905 days ago
Quick next generation sequencing (NGS) terms definition
...gnature produced by these type of reads is known as read-pair signature.split reads: a read that can o...pped to the reference genome by breaking into two sub-reads is called a split-read. These types of reads al...2519 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
...genesis -- The development of a new clade; the splitting of a single lineage into...er consideration. The points at which lineages split represent ancestor taxa to th...ter group -- The two clades resulting from the splitting of a single lineage. ste...2459 days ago
PerlOneLiner for Bioinformatician
...st = (1,2)x20; print "@list"' # Create an array from a string@months = split ' ', "Jan Feb Mar Apr May Jun...lues for characters in the stringperl -le 'print join ", ", map { ord } split //, "hello world"' # Convert...2299 days ago
2214 days ago
Parallel Processing with Perl !
...t all together, If you have 100GB data you can do this step 1 : split the dataset equally according...y take a few hours(about 2-3 hrs for 100GB file)You can use unix “split” command for thisfor ex...2076 days ago