Ra assembler - a de novo DNA assembler for third generation sequencing data
...that used to be run individually.This project aims to ease the usage of Ra by integrating it into a complete de novo assembly tool. Unlike other state-of-the-art assemblers, R...2335 days ago
Alien_Hunter : prediction of putative Horizontal Gene Transfer (HGT) events
...and captures more reliably the local composition of a sequence compared to fixed-order methods. Optionally the predictions can be parsed into a 2-state 2nd order Hidden Markov Model...2324 days ago
MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
...s for single molecula sequencing (SMRT) reads. MECAT employs novel alignment and error correction algorithms that are much more efficient than the state of art of aligners and error...2200 days ago
LAMSA: fast split read alignment with long approximate matches
...mulated and real datasets having various read lengths and sequencing error rates, the results demonstrate that it is substantially faster than the state-of-the-art long read aligners...2196 days ago
1945 days ago
Apollo: First instantaneous, collaborative genomic annotation editor available on the Web
...uo;Information Editor’. History tracking with undo/redo functions is available. Users are able to directly set an annotation to a specific state, choosing from the ‘His...1815 days ago
MSAProbs - Parallel and accurate multiple sequence alignment
MSAProbs is a well-established state-of-the-art multiple sequence alignment algorithm for protein sequences. The design of MSAProbs is based on a combination of pair hidden Mark...1776 days ago
CLARK: Fast, accurate and versatile sequence classification system
...rms/centromeres (in the absence of a finished assembly for the reference genome), CLARK outperforms in classification speed and precision the best state-of-the-art methods. http://c...1555 days ago
Dahak: benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.
Dahak is a software suite that integrates state-of-the-art open source tools for metagenomic analyses. Tools in the dahak software suite will perform various steps in metagenomic ana...1501 days ago
medaka: Sequence correction provided by ONT Research
...individual sequencing reads against a draft assembly. It outperforms graph-based methods operating on basecalled data, and can be competitive with state-of-the-art signal-based metho...1462 days ago