Results for "Stats"
Bio-Scripts
Calculate some statistics for a DNA alignment with Perl
...io::Align::DNAStatistics; my $stats = Bio::Align::DNAStatistics->...gnin->next_aln; my $jcmatrix = $stats->distance(-align => $aln,...lnobj->each_seq; my $results = $stats->calc_KaKs_pair($alnobj, $seq...t "\n\n"; } my $result3 = $stats->calc_average_KaKs($alnobj, 1...2642 days ago
- ...AOSW_8_2_C1CBGACXX.IND11_noribo_clean.fastq --pairs_together --PARALLEL_STATS Converting input files. (b...s/trinityrnaseq-Trinity-v2.6.6/util/..//Inchworm/bin/fastaToKmerCoverageStats --reads left.fa --kmers jelly...
2120 days ago
- ...eline" cd out.pipeline echo "[REAPR pipeline] Running stats" echo "/home/urbe/Tools/Reapr_1.0.18/reapr stats -p /home/urbe/Tools/Reapr_1....pipeline cd out.pipeline echo "[REAPR pipeline] Running stats" /home/urbe/Tools/Reapr_1.0....
2092 days ago
- ...#MORE at https://vcftools.github.io/perl_module.html # Calculate stats separately for the filter field, quality and non-indels vcf-stats file.vcf.gz -f FILTER,QUAL=10...
1519 days ago
Installing docker for Bioinformatics on Ubuntu !
...tar archive (streamed to STDOUT by default) search Search the Docker Hub for images start Start one or more stopped containers stats Display a live stream o...1506 days ago
Install assembly-stats with conda !
(JitMetaENV) ➜ META_PE conda install -c bioconda assembly-stats Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1209 days ago
Install assembly-stat using conda !
vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda assembly-stats Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1047 days ago
Run Pango on your multifasta file !
...nTreeHeaders_v1.joblib Designated hash: /home/jnarayan/anaconda3/envs/pangolin/lib/python3.8/site-packages/pangoLEARN/data/lineages.hash.csv Job stats: job cou...880 days ago
- #!/bin/bash #Counting k-mers for different k echo "k,unique,distinct,total" for k in {1..15}; do kat hist -o phiX_$k.hist -m $k phiX.fasta >/dev/null 2>&1 egrep -v '^#' phiX_$k.hist|awk '{if ($1==1) u=$2; d+=$2; t+=$2*$1;}\ END{print "'$k',"u","d","t}' done
787 days ago
Perl script to parse blast results and plot basic stats !
...NGTH'); my ($min_evalue, $max_evalue, $avg_evalue) = calculate_summary_stats(\@blast_entries, 'EVALUE'); my ($min_bitscore, $max_bitscore, $avg_bitscore) = calculate_summary_stats(\@blast_entries, 'BITSCORE');...87 days ago
