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Bioinformatics Algorithm Demonstrations and Tutorials
...ented in the spreadsheet program Microsoft Excel. Spreadsheets provide an interesting platform for demonstration of algorithms, since various steps of the calculations can be&nb...3700 days ago
shovill: Assemble bacterial isolate genomes from Illumina paired-end reads
Shovill is a pipeline which uses SPAdes at its core, but alters the steps before and after the primary assembly step to get similar results in less time. Shovill also supports other...1215 days ago
- ...ut de novo assembly of a microbial genome. Small RNAs Basic Galaxy Tutorial Quality control for small RNA This tutorial covers initial steps of the workflow for analysis...
3649 days ago
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
...The software is currently alpha level, feel free to use and report issues encountered. Canu is a hierachical assembly pipeline which runs in four steps: Detect overlaps in high-n...2910 days ago
- _A5-miseq_ is a pipeline for assembling DNA sequence data generated on the Illumina sequencing platform. This README will take you through the steps necessary for running _A5-miseq_....
2813 days ago
- ...tid genome (plastome) or the mitochondrial genome (chondriome). Nevertheless, you can upload any GenBank entry. The workflow is devided into three steps. More at http://o...
2815 days ago
- ...ndans will automatically close the gaps resulting from genome assembly or scaffolding more details. The pipeline consists of three steps/modules: redundancy reduct...
2799 days ago
Maq: Mapping and Assembly with Quality
...rceForge.net. The project page is available athttp://sourceforge.net/projects/maq/. Maq is previously known as mapass2. Run Maq Now Follow these steps to try Maq. All you need is a...2717 days ago
- ...ic sequences of not only bacteria but also entire chromosomes of vertebrates on a nominal desktop computer. Cgaln performs an alignment job in two steps, at the block level and then...
2625 days ago
- Our basic strategy in building homology maps is to use exons that are orthologous in multiple genomes as map "anchors." Given K genomes, the steps in the map construction are as foll...
2641 days ago
