CGView - Circular Genome Viewer
CGView is a Java package for generating high quality, zoomable maps of circular genomes....amples of the various output types, see the CGView gallery. http://wishart.biology.ualberta.ca/cgview/gallery.ht...2159 days ago
NextSV: a meta-caller for structural variants from low-coverage long-read sequencing data
NextSV, a meta SV caller and a computational pipeline to perform SV calling from low coverage long-read sequencing data. NextSV integrates three aligners and three SV c...2111 days ago
PureCN: copy number calling and SNV classification using targeted short read sequencing
This package estimates tumor purity, copy number, and loss of heterozygosity (LOH), and...ssification using targeted short read sequencing.” Source Code for Biology and Medicine, 11, 13. do...2109 days ago
Hercules: a profile HMM-based hybrid error correction algorithm for long reads
Choosing whether to use second or third generation sequencing platforms can lead to trade-offs between accuracy and re...tudies require long and accurate reads including de novo assembly, fusion and structu...2098 days ago
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Biotite: A general framework for computational biology
...nd structure modules serve for the analysis of sequence and structural data analysis respectively,&n...The Biotite package bundles popular tasks in computational biology into an unifying framework, w...1978 days ago
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EXCAVATOR: detecting copy number variants from whole-exome sequencing data
EXCAVATOR, for the detection of copy number variants (CNVs) from whole-exome seque...from whole-exome sequencing data.EXCAVATOR has been published on Genome Biology (http://genomebiology.com/2013/14/10/R120/abstract)...1961 days ago
Osprey: Network Visualization System
Osprey is a software platform for the visualization of complex biological inter...Stark, C., Tyers M. "Osprey: A Network Visualization System." Genome Biology 2003 4(3):R22 [Genome Biology] [PDF] [PubMed]&nbs...1945 days ago