phyloXML: XML for evolutionary biology and comparative genomics
...of XML itself and the provision of <property> elements by phyloXML, extensibility as well as domain specific applications are ensured. The structure of phyloXML is described by&n...1603 days ago
HaploTypo: a variant-calling pipeline for phased genomes
.... with resolved haplotypes) reference genomes are available. However, most genetic variant calling tools do not explicitly account for haplotype structure. Here, we present HaploTypo,...1593 days ago
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HNADOCK: a nucleic acid docking server for modeling RNA/DNA–RNA/DNA 3D complex structures
The HNADOCK server is to predict the binding complex structure between two nucleic acid molecules through a h...nteractions. Users are required to provide the three-dimensional (3D) structures of the two molecules to be d...1424 days ago
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RosettaAntibodyDesign (RAbD): A general framework for computational antibody design
...ign of antibodies, in which a user can easily tailor the run to their project needs. The algorithm is meant to sample the diverse sequence, structure, and binding space of an anti...1317 days ago
Caretta – A multiple protein structure alignment and feature extraction suite
Caretta – a multiple protein structure alignment and feature extraction suite Caretta, a multiple structure alignment suite meant for hom...lication and additionally outputs an aligned structure feature matrix for a given se...1228 days ago
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