phyloXML: XML for evolutionary biology and comparative genomics
...ssociated data. PhyloXML provides elements for commonly used features, such as taxonomic information, gene names and identifiers, branch lengths, support values, and gene duplication...2349 days ago
mojolicious: a next generation web framework for the Perl programming language.
...work, static file server, CGI/PSGI detection, first class Unicode support and much more for you to disc...e, connection pooling, timeout, cookie, multipart and gzip compression support. Built-in non-blocking I/O w...2305 days ago
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2154 days ago
fragScaff: Genome Assembly with Contiguity Preserving Transposition
...rce of contiguity information for scaffolding de novo genome assemblies. FragScaff is complementary to Lachesis, providing midrange contiguity to support robust, accurate chromosome-s...2183 days ago
AfterQC: Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
...s, bad reads and the QC results of each fastq file/pair. Currently it supports processing data from HiSeq 2...s The author has reimplemented this tool in C++ with multithreading support to make it much faster. The n...2137 days ago
2098 days ago
PureCN: copy number calling and SNV classification using targeted short read sequencing
...N is designed for targeted short read sequencing data, integrates well with standard somatic variant detection and copy number pipelines, and has support for tumor samples without mat...2096 days ago
LSC: Improving PacBio Long Read Accuracy by Short Read Alignment
Added Command line argument support. Multi-stage execution modes. Support for parallelization. Now execution proceeds in batches of lo...mpressed intermediate files. Added utilities folder. Added support for multiple short read files...2068 days ago
RepeatMasker compatible blast tool
...ogram "rmblastn" for use with RepeatMasker and RepeatModeler. RMBlast supports RepeatMasker searches by add...necessary features to the stock NCBI blastn program. These include: Support for custom matrices ( without...1976 days ago