Supernova: generates phased, whole-genome de novo assemblies from a Chromium-prepared library.
...at we have not extensively tested genomes larger than human, and any genome above approximately 4 GB should be considered experimental and is not supported.1435 days ago
CSA: A high-throughput chromosome-scale assembly pipeline for vertebrate genomes
...folded assemblies (for example from HiC or 10X Genomics), or even from diverged (~65-100 Mya) reference genomes for ordering the contigs and thus support the assembly process. This ty...1152 days ago
1419 days ago
1396 days ago
SqueezeMeta: a fully automated metagenomics pipeline, from reads to bins
...ering all steps of the analysis. SqueezeMeta includes multi-metagenome support allowing the co-assembly of r...igs and bins, allowing to spot potential chimeras. Metatranscriptomic support via mapping of cDNA reads aga...1357 days ago
parallelLastz: Lastz with multi-threads support.
Running Lastz (https://github.com/lastz/lastz) in parallel mode. This program is for single computer with multiple core processors. When the query file format is fasta...1352 days ago
Breedbase is a comprehensive breeding management and analysis software
...to design field layouts, collect phenotypic information using tablets, support the collection of genotyping...provide Genomic Selection related analyses and predictions. Breedbase supports the BrAPI standard....1214 days ago
1214 days ago
Luigi: a Python package that helps you build complex pipelines of batch jobs.
...n from PyPI. Documentation for the latest release is hosted on readthedocs. Run pip install luigi[toml] to install Luigi with TOML-based configs support.1046 days ago
870 days ago