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Results for "
Symbol
IDs
Convert
"
Wire posts
Jit
@jit.aber
Extract sequence by
ids
$ xargs samtools faidx Adineta_vaga.v2.pep.fa < Alien
Ids
> allAlienSeq.fa #Extract #
Ids
#Sequences
1974 days ago
Neelam Jha
@neelam
(smrttools) ➜ allBam for i in *.bam; do bamtools
convert
-format fasta -in $i -out $i.fasta; done #
Convert
#fasta
1934 days ago
Jit
@jit.aber
for i in $(ls *.ab1); do
convert
_trace -out_format scf < $i > ${i%.ab1*}.scf; done #
Convert
#AB12SCF #SCF #AB1
1933 days ago
Rahul Nayak
@rahul
Fastq 2 fasta
convert
$ sed '/^@/!d;s//>/;N' sample1.fq > sample1.fa #fastq2fasta #fastqtwofasta
1919 days ago
LEGE
@lege
Multiline to singleline covert. $ awk '/^>/ {printf("%s%s\t",(N>0?"\n":""),$0);N++;next;} {printf("%s",$0);} END {printf("\n");}' < input.fa #Multi #Single #
Convert
#awk
1632 days ago
BioStar
@biostar
HOW TO
CONVERT
A PYTHON SCRIPT TO MODULE https://tutswiki.com/
convert
-python-script-to-module/ #Module #Python
999 days ago
Jit
@jit.aber
#
Convert
#FASTQ to FASTA and set bases of #quality lower than 20 to N $ seqtk seq -aQ64 -q20 -n N IN.fastq > OUT.fasta
998 days ago
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