Results for "Symbol IDs Convert"
Blogs
BBTools for bioinformatician !
BBMap.sh Mapping Nanopore reads BBMap.sh has a length cap of..."Match Rate" is the number of symbols indicating a reference match...retty obvious. Convert SAM format from 1.4 to 1.3 (...the output filename, the "%" sym...ads in dual files using the # symbol. For example: Code: $ bbsp...2264 days ago
- LiftOver is a necesary step to bring all genetical anal...ence build. LiftOver can have three use cases: (1) Convert genome position from one geno...o lift them over to NCBI build 37 (UCSC hg19). (2) Convert dbSNP rs number from one buil...
2153 days ago
- +4 more Blogs
Bookmarks
Download mutliple fasta file from NCBI in one GO!!
if you have less time, then use three ways mentioned in bookmark link to extract/down...en that you already have a list of GIs or accession IDs . Alternatively, use one lin...re GIs.txt contains a list of GIs or accession IDs. (...3903 days ago
- CrossMap is a program for convenient conversion of genome coordinates (or annotatio...aligning sequences to reference genome. We do not recommend using CrossMap to convert genome coordinates between sp...
3002 days ago
- +20 more Bookmarks
Files
- DOWNLOAD LINK: https://github.com/BioInf-Wuerzburg/proovread/raw/master/util/blasr-...mtools sort: can't open "temporarySam": No such file or directory[bwa_aln_core] convert to sequence coordinate... 1.0...
2145 days ago
Pages
Bio++ : C Language libraries for your biological need
C has always been a language that never atte...it and efficiency. It was possible to convert from C to C++ gradually,...derms and other invertabrates)Amino acids properties: volume, polarity and...and store in string arrays, etc.Text: convert text to any other type and vi...3941 days ago
Genome Assembly Tools and Software - PART2 !!
The genome assemblers generally take a file of short sequence reads and a file of q...assembly problem by using the unique gap-flanking sequences to group reads and convert the problem to a local assemb...2679 days ago
- +3 more Pages
Top-level pages
Perl one-liner for bioinformatician !!!
With the emergence of NGS technologies, a...numbering lines, doing calculations, converting and substituting text, del...110, 103); print pack("C*", @ascii)'#converts ascii values into character...' #Camel Casingperl -pe 's|\n|\r\n|' #Convert unix new lines into DOS new l...3621 days ago
Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad This is an iOS app that allows f...t gene function. Enter a gene symbol or gene name, for example "CD...Search proteins by UniProt IDs, gene name or keywords Collect...Features: Look up genes by symbol or description. Gene inde...ver 30 species, based on gene symbol...3535 days ago
- +11 more Top-level pages
Wire posts
News
National Workshop on Data Deluge in Biology: Use of High-Performance Grid & Cloud computing
Workshop on "Data Deluge in Biology: Use of High-Performance Grid & Cloud computing"- December 19-20, 2013 in...ber 10th, 2013. Confirmation mail need to be sent to the following three email-ids:...3793 days ago
- Genome Workbench 2.10.7 is here! New features include added support for local custom BLAST databases and improvem...(MacOS): fixed issue with table visibility Fixed bug where different molecules IDs in...
2858 days ago
- +1 more News
Opportunity posts
SRF/JRF Bioinformatics at CIARI
Realizing the importance of Island Agriculture to meet the requirements of local po...cultural production technologies which utilizes the strengths of the island and convert the constraints in opportunit...3069 days ago
JRF Bioinformatics job position in University of Hyderabad
JRF Bioinformatics Eligibility : ME/M.Tech(Bio-Informatics/Bio-Chemistry Engg), MSc(Bio-Informatics) Locati...aid position. The candidates should also enclose detailed CV and the name/Email IDs of...3044 days ago
Video
Translational Bioinformatics: Transforming 300 Billion Points of Data
Translational Bioinformatics: Transforming 300 Billion Points of Data into Diagnost...may help. Dr. Butte's lab at Stanford University builds and applies tools that convert more than 300 billion points...3904 days ago
Bio-Scripts
BioPerl to convert between sequence formats from Fasta to Genbank
#!/usr/local/bin/perl -w # Sequence formats to choose: Fasta, EMBL. GenBank, Swissprot, PIR and GCG use Bio::SeqIO; $inFile = "BRCA2.fa"; $in = Bio::SeqIO-...2909 days ago
Perl script to extract lines with matching ids !!
#!/usr/bin/perl use strict; use warnings; my %patterns; #USAGE: perl extactByIds.pl Idsfile1 file2 > Result # Open file and get patterns to search for open(my $fh2,"2868 days ago
- +50 more Bio-Scripts
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of Gene Engineeri...ion of these changes in some other selected body fluids will be revealed within the s...rmation about the system the articles with the PMID IDs; PM...2355 days ago
Tags
A script to convert Ensembl, Unigene, Uniprot and RefSeq IDs to Symbol IDs
Hello, I am looking for a program/function that converts different sources of IDs to Symbol IDs. The script in R will be an added advantage ... ThanksTags: Ensembl, Unigene, Uniprot, RefSeq, IDs, Symbol IDs Convert, R
3549 days ago
