Results for "Syntax Error"
Top-level pages
Data mining, the extraction of hidden predictive information from large databases. Da...Regression - Attempts to find a function which models the data with the least error. Association rule learning -...3960 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quan...etection and correction of sequencing errors. Kelley et al, Genome Biol 1...bMedCentral Correction of sequencing errors in a mixed set of reads. Sal...e of editing or are simply sequencing errors - the authors stand by their...3794 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - de novo and reference assembly of Sa...he SOAP suite. See above. VCAKE - De novo assembly of short reads with robust error correction. An improvement on...3533 days ago
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench - de novo and reference assembly of...SOAP suite. See above. * VCAKE - De novo assembly of short reads with robust error correction. An improvement on...3257 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file...the assembly in a model encompaasing error rate, insert length and other...ol that aims to identify the assembly errors with high accuracy in an unb...ijn graph by decomposing reads within error-prone regions, while extendin...2700 days ago
Perl Special Vars Quick Reference
$_ The default or implicit variable. @_ Subro...at Accumulator Status Reporting $? Child error. Status code of most recent system call or pipe. $! Operating System Error. (What just went 'bang'?)...2658 days ago
Awesome perl frameworks, libraries and software - PART 1
...io and is robust to transcription errors. It is mainly written as a pe...merly known as bounceHammer 4: an error mail analyzer. shenwei356/bio...ent system Ovid/DB--Color - Syntax highlighting the Perl debugg...er/ModernPerl-sublime - Perl syntax highlighting for Sublime Tex...2503 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from R...onsensus (OLC) approach without the necessity of an error correction stage (uses minima...h3/miniasm LINKS Scaffolding genome assembly with error-containing long sequence (e.g...2385 days ago
- When you have both Illumina and Nanopore data, then SPAdes remains a good opt...name> file with untrusted contigs Pipeline options: --only-error-correction runs only read error correction (without assemblin...
2365 days ago
Run miniasm assembler on nanopore reads !
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It...sequences to generate the final unitig sequences. Thus the per-base error rate is similar to the raw in...2344 days ago
