BEAP: Blast Extension and Assembly Program
The Blast Extension and Assembly Program (BEAP) is a computer program that uses a shor...l length" sequence for functional analysis, or at least to obtain neighboring regions of the segment for SNP discov...2157 days ago
2157 days ago
2184 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
Provides interactive, configurable and elegant graphics visualization of the chromosomes or chromosome regions of any living organism allowi...1852 days ago
DUPCAR: Reconstructing Contiguous Ancestral Regions with Duplications
we propose a heuristic algorithm, called DUPCAR, for reconstructing ancestral genomic...used to reconstruct the ancestral orders by connecting genes into contiguous regions based on predicted adjacencie...2178 days ago
Epiviz: an interactive visualization tool for functional genomics data.
Epiviz is an interactive visualization tool for functional genomics data. It supports...er genome browsers, but allows multiple visualizations of data within genomic regions using scatterplots, heatmaps...2129 days ago
FMLRC: a long-read error correction tool using the multi-string Burrows Wheeler Transform
FMLRC, or FM-index Long Read Corrector, is a tool for performing hybrid correction of...er" and a longer "K-mer". This allows FMLRC to correct through low complexity regions that are computational diffic...2097 days ago
CoLoRMap: Correcting Long Reads by Mapping short reads
Second generation sequencing technologies paved the way to an exceptional increase in...rt reads that minimizes the edit score to a long read and extending corrected regions by local assembly of unmapped...2087 days ago
P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads
P_RNA_scaffolder is a novel scaffolding tool using Pair-end RNA-seq to scaffold...mportant feature of this method is to improve the completeness of gene regions and long-coding gene regions (for instance, circRNA).2069 days ago
SeqMonk:A tool to visualise and analyse high throughput mapped sequence data
SeqMonk is a program to enable the visualisation and analys...isualisation and analysis Visualisation of mapped regions against an annotated genome....en data sets Statistical analysis of data to find regions of interest Creation of repo...2065 days ago