1559 days ago
1563 days ago
Sequanix: a dynamic graphical interface for Snakemake workflows
A Python library dedicated to NGS analysis (e.g., tools to visualise standard NGS fo...s. Standalone applications: sequana_coverage ease the extraction of genomic regions of interest and genome covera...1558 days ago
Synteny and Rearrangement Identifier (SyRI)
...re then used as input to SyRI. SyRI identifies syntenic path (longest set of co-linear regions), structural rearrangements (i...cal variations (SNPs, indels, CNVs etc) within syntenic and structural rearrangements, and un-aligned regions.1475 days ago
HS3D: Homo Sapiens Splice Sites Dataset
HS3D (Homo Sapiens Splice Sites Dataset) is a data set of Homo Sapiens Exon, Intron and Splice regions extracted from GenBank Rel.12...one (2002). HS3D, a Dataset of Homo Sapiens Splice Regions, and its Extraction Procedure...1437 days ago
Mercator: Multiple Whole-Genome Orthology Map Construction
...relationships between and within multiple genomes. The term "syntenic" is often used to describe regions of multiple genomes that are...K genomes, we would like to identify all orthologous genomic regions as well as paralogous regions...1461 days ago
1451 days ago
The wavefront alignment (WFA) algorithm
The wavefront alignment (WFA) algorithm is an exact gap-affine algorithm that takes advantage ofhomologous regions between the sequences to acce...1421 days ago
PhiSpy: PhiSpy identifies prophages in Bacterial (and probably Archaeal) genomes
PhiSpy identifies prophages in Bacterial (and probably Archaeal) genomes. Given an ann...ed genome it will use several approaches to identify the most likely prophage regions. Initial versions of PhiSpy...1418 days ago
Sibelia: A comparative genomics tool
Sibelia: A comparative genomics tool: It assists biologists in analysing the genomi...ns of microorganisms. Sibelia is useful in finding: (1) shared regions, (2) regions that present in one group of...1366 days ago