Tools to detect synteny blocks regions among multiple genomes
...genome rearrangements, and so synteny blocks from two related species (e.g....nown genes to be considers as synteny block as long as there is con...ynteny as the conservation of blocks of order within two sets of ch...also be referred to as shared synteny. The NHBLI/NCBI Glossary defi...2749 days ago
Computer simulation of genetic mechanism !!
Computer simulation is the discipline of designing a model of an actual or theoretical...imulation of multiple epistasis, linkage disequilibrium patterns and haplotype blocks for genome-wide interaction a...3113 days ago
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Ensembl comparative genomics resources
The Ensembl comparative genomics resources are one such reference set that facilitates...ple whole-genome alignments from which large-scale synteny, per-base conservation scores...-based visualizations are also available including synten...3127 days ago
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Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discovered that m...ications of more complex 100-200 base sequences.Segmental Duplications - Large blocks of 10-300 kilobases which are...2350 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequence reads and a file of qualit...entation of DNA sequence reads. r2cat – Synteny Plots & Comparative Assem...ng a q-gram filter. The mapping is visualized in a synten...2824 days ago
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Accelerating Biology 2014:The Next Wave (18-22 February, 2014)
New advances in biology are being made at a rapidly increasing pace, largely due to ne...d to decipher pieces of data generated through high throughput techniques into blocks of information that will help...3983 days ago
How DNA is Packaged (Advanced)
Each chromosome consists of one continuous thread-like molecule of DNA coiled tightly...proteins, and contains a portion of the 6,400,000,000 basepairs (DNA building blocks) that make up your DNA. Orig...4015 days ago
How far can bioinformatics go creating organisms used for testing?
"I think you can get very far on a technical level. The problem is that a human body i...us about his work. From the episode "Science for life – mapping the building blocks of the human body". Watch the...3627 days ago
Perl script to run SATSUMA in loop !
#!/usr/bin/perl -w use strict; use File::Temp qw(tempfile); # Usage perl 1by1.pl for SATSUMA analysis # User need to set the reference multifasta file name here...2279 days ago
Install and set up i-adhore for synteny and wgd analysis ! -- step by step --
#Need to download i-adhore-3.0.01.tar.gz from https://wdiceryfd4rjn74bjhhtz2k5di--bioinformatics-psb-ugent-be.translate.goog/webtools/i-adhore/licensing/ #Follow th...1342 days ago
Comment on "Sibelia: A comparative genomics tool"
...oose" usually produces fewer blocks, but longer. And it may lose some small synteny blocks (shorter than 15 000 BP), wh...default, Sibelia filters out synteny blocks shorter than 5 000 BP....on "d3" visualization"). The blocks are also can be visualized wit...1423 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
halSynteny program makes it possible to speed up the comput...ions by over two times in comparison with SatsumaSynteny2, another popular tool. Such...g C++. https://phys.org/news/2020-06-scientists-synteny-blocks-animals.html https://github....1549 days ago