Results for "TE"
Blogs
Run bash script in Perl program !
...orm different functions. Despite the fact that Python is commo...rsion of 'alienomics', is written in Perl. Often it's a major...function (perlfunc) that executes a command but never returns,...ity known as a2p which translates awk command to Perl. It take...646 days ago
Ancient whole genome duplication (WGD) detection tools !
...ions at each non-synonymous site. At present, some people hav...hub.com/yongzhiyang2 012/WGDdetectorhttps://bmcbioinformatics....ed with bioconda conda create -n wgd python=3.5 blast mcl m...zip *.gz First conda activate wgdstart our analysis environ...1165 days ago
Innovative blog and portfolio website!
...o you ever feel overwhelmed or frightened by browsing through someon...eautiful, responsive portfolio website links and wishing you could c...!Read all the way to the end for a step-by-step guide on creating yo...hub.io/ http://www.rleonardi.com/interactive-resume/ https://ecoev...1057 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall....1093/bioinformatics/btv120. Epub 2015 Feb 28. Adapter sequences: Optimal enzymes f...e and environment for statistical computing. R Core Team (2013). R Foundation for St...1056 days ago
Bioinformatics tools for telomere to telomere assembly !
...s Marschall)● SQANTI3 – an automated pipeline for the classificat...of data and the preprocessing pipeline (Rocío Amorín de Hegedü...e amplicon data; performs allele calling while detecting polymorphic sites within...1001 days ago
Levenshtein and Damerau-Levenshtein distance !
Levenshtein Distance Also known as Edit Distanc...target one. For example, if the target term is “book” and t...;c”, which will give us a Levenshtein Distance of 2.Edit Distance...merau-Levenshtein distance It is an extension to Levenshtein Distance,...959 days ago
- REST API The Representational State Transfer (REST) sample clients are provided for a number of programming languages. For details of how to use these clients, downl...
953 days ago
Basic Structure of Snakemake Pipeline Run !
...of the snakemake “formula” file Note: The default file that snakem...config.json = json format file with extra parameters for our snakemake file to u...ting them. snakemake --dry-run User can execute rules of interest. snakema...943 days ago
Classification of SARS-CoV2 Variant !
The scientists established some guidelines for determining whether a variant is a legitimate branch of an existing lineage: The variant should be transmitted from its original location t...900 days ago
Illumina based assembly pipeline steps !
...files (cat) Read QC (FastQC) Adapter trimming (fastp) Removal of...(iVar; amplicon data only) Duplicate read marking (picard; optiona...nd consensus sequence generation routes (iVar variants and consensus...otation tracks (ASCIIGenome) Intersect variants across callers...886 days ago
