SeQuiLa-cov: A fast and scalable library for depth of coverage calculations
...page: http://biodatageeks.org/sequila/ • Source code repository: https://github.com/ZSI-Bio/bdg-sequila • Operating system: Platform independent • Progra...1612 days ago
Nucleus: Python and C++ code for reading and writing genomics data.
...cleus enables painless integration with the TensorFlow machine learning framework, as anywhere a genomics file is consumed or produced, a TensorFlow tfrecords file may be used inste...1563 days ago
1557 days ago
Nextflow: Data-driven computational pipelines
Nextflow enables scalable and reproducible scientific workflows using software con...active workflows on clouds and clusters. More at https://github.com/nextflow-io/nextflow...1545 days ago
Best Practices for Variant Calling with the GATK
The presentations below were filmed during the March 2015 GATK Workshop, part of the BroadE Workshop series. At the time of this workshop, the current version of Broa...1543 days ago
Phytozome v12.1: plant science community hub for accessing palnts genomic data
...n of plant genomes into a single resource and performing comprehensive and uniform annotation and analyses, Phytozome facilitates accurate and insightful comparative genomics studie...1519 days ago
flexidot: Highly customizable, ambiguity-aware dotplots for visual sequence analyses
FlexiDot is a cross-platform dotplot suite generating high quality self, pairwise and all-against-all visualizations. To improve dotplot suitability for comparison of consensus...1481 days ago
VirtualFlow: a versatile, parallel workflow platform for carrying out virtual screening
related tasks on Linux-based computer clusters of any type and size which are managed by a batchsystem (such as SLURM). Currently, there exist two v...1431 days ago
Liftoff: an accurate tool that maps annotations in GFF or GTF between assemblies
Liftoff, an accurate tool that maps annotations in GFF or GTF between assemblies of the same, or closely-related species. Unlike current coordinate lift-over tools which requi...1413 days ago
MAGIC: A tool for predicting transcription factors and cofactors driving gene sets using ENCODE data
...P-seq data to look for statistical enrichment of TFs and cofactors in gene bodies...s targets or non-targets. When compared to other TF mining resources, MAGIC displ...s: 1) A cell line expressing or lacking single TF, 2) Breast tumors divided a...1265 days ago