Installing ggplot2 and its dependencies on Ubuntu !
...ud.r-project.org/src/contrib/utf8_1.1.4.tar.gz' Content type...rammatically if U_CHARSET_IS_UTF8 is defined and set... no ch...E=2 -g -c stri_container_listutf8.cpp -o stri_container_listut...listraw.o stri_container_listutf8.o stri_container_regex.o str...1571 days ago
1563 days ago
Install python-numpy python-scipy python-matplotlib on Ubuntu !
...ython-tk python-tz tk8.6-blt2.5 ttf-bitstream-vera Suggested pac...ve-extra-utils texlive-latex-extra ttf-staypuft python-numpy-dbg pyt...u.com/ubuntu bionic/universe amd64 ttf-bitstream-vera all 1.10-8 [35...ting previously unselected package ttf-bitstream-vera. Preparing to...1563 days ago
Install Parrot Virtual Machine !
...............done. init::hints - Load platform and local hints files........at - What formats should be used for sprintf............done. auto::isreg...on include gettext.............yes. auto::snprintf - Test for snprintf........1559 days ago
Pack a perl program with their dependencies on Ubuntu !
#Follow steps to create your own executable ./web jit@jit-HP-Pro-3335-MT:~/Downloads/autoConTAMPR/bin$ sudo apt install libpar-packer-perl Reading package lists.....1533 days ago
Commands to install conda in Ubuntu !
...(AES, DES, RSA, ElGamal, etc.). pyopenssl A thin Python wrapper around (a subset of) the OpenSSL library. kerberos (krb5, non-Windows platforms) A network authentic...1533 days ago
Reformat the multifasta for sequence length !
#awk oneliner to reformat the multifasta sequences awk '!/^>/ {printf "%s", $0; n = "\n"} /^>/ {print n $0; n = ""}' file.fasta | fold -w 1001413 days ago
Bash script to get exon fragments from genome files !
#Exons are already defined in the GTF file, so we simply need to print lines that are marked exonic. gunzip -c genome_file.gtf.gz | awk 'BEGIN{OFS="\t";} $3=="exon" {print $1,$4-1,$5}' | bedtools sort | bedtools merge -i - | gzip > my_exon.bed.gz1387 days ago
Bash script to extract intronic fragments !
...the gene and exonic coordinates; #by subtracting the exonic regions from the genic region, we have the intronic region. gunzip -c genome_file.gtf.gz | awk 'BEGIN{OFS="\t";} $...1387 days ago
Bash script to get intergenic region from genome files !
...somes. wget http://xxx.chrom.sizes cat xxx.chrom.sizes | sed 's/^chr//' | sed 's/Cp/Pt/' > tmp mv tmp xxx.chrom.sizes gunzip -c genome_file.gtf.gz | awk 'BEGIN{OFS="\t";} $...1387 days ago