List of In-silico Binding Site Prediction Tools
...//pocket.uchicago.edu/fpop/) is a database of the protein functional...hape analysis. In this relational database, we collected the spatial...ww.modelling.leeds.ac.uk/sb/ is a database of known ligand binding si...analyses of protein structure and stability. However accessible surf...3747 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...enome builds and annotation databases Performs base trimming,...and BWA and a SNP (dbSNP!) database is required Input: FASTQ...ommand- line program; Input: tab- deliminted depth chart forma...licing motifs; uses ensembl database 70 Input: Gene Name, Ense...2912 days ago
Source Code and Pseudo Code !!
...include Do While...EndDo; Do Until...Enddo; While .... Endwhile is acceptable. Also, Loop .... endloop is...etc. a consistent number of spaces, such as four. Alternatively, use the tab key. One or two spaces is ins...2662 days ago
Awesome perl frameworks, libraries and software - PART 1
...sp;- Perl binding for Redis database pplu/aws-sdk-perl -...caputo/poe - POE is a portable perl multitasking and netwo...r for the MySQL and MariaDB databases beide/Bootimg-scripts&nb...engine written in Perl. No database required. gugod/Test-Cont...2493 days ago
PerlOneLiner for Bioinformatician
...file so that every set of 10 lines becomes one tab-separated lineperl -lpe '$\ =...l -le 'print "aa".."zz"' # Create a hex lookup table@hex = (0..9, "a".."f") # C...+)/\u\1/g' # Strip leading whitespace (spaces, tabs) from the beginning of each...2305 days ago
Convert VCF to tab-deilimited table
...ed with GATK : java -Xmx8g -jar GenomeAnalysisTK.jar \ -T VariantsToTable \ -R reference.fa \ -V...vcf \ -F CHROM -F POS -F REF -F ALT -GF GT \ -o reference_genomes_GT.table multiple_sample.vcf should...2185 days ago