Ten recommendations for creating usable bioinformatics command line software
Bioinformatics software varies greatly in quality. In terms of usability, the command line interface is the first experience a user will have of a tool. Unfortunately, this is often...3620 days ago
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Entrez Direct: E-utilities on the UNIX Command Line
...interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UNIX terminal window. Functions take search terms from command-line arguments....2756 days ago
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Musket: a multistage k-mer spectrum based corrector
...ploys the k-mer spectrum approach and introduces three correction techniques in a multistage workflow. Our performance evaluation results, in terms of correction quality and de...2343 days ago
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