Results for "Thread"
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
...@INC contains:/usr/lib/perl5/5.10.0/i386-linux-thread-multi/usr/lib/perl5/5.10.0/usr/local/lib/perl5/site_perl/5.10.0/i386-linux-thread-multi/usr/local/lib/perl5/sit...@INC contains:/usr/lib/perl5/5.10.0/i386-linux-thread-multi/usr/lib/perl5/5.10.0/us...3947 days ago
BBTools for bioinformatician !
...un in paired-end mode with multiple threads, because the insert-size average is calculated on a per-thread basis, which affects mapping;...ult reorder the reads when run multithreaded. You can add the flag "orde....shhttp://seqanswers.com/forums/showthread.php?p=170904In light of the q...2268 days ago
- +2 more Blogs
Bookmarks
- ...e-assembled contigs using mate-pair data. It also produces editable scaffold maps, allowing either to build gapped scaffolds or usable as a common thread for the manual improvement of...
2850 days ago
MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
...the state of art of aligners and error correction tools. MECAT can be used for effectively de novo assemblying large genomes. For example, on a 32-thread computer with 2.0 GHz CPU , M...2183 days ago
Top-level pages
Commercial and public next-gen-seq (NGS) software
...ory. Uses a Burrows-Wheeler-Transformed (BWT) index. Link to discussion thread here. Written by Ben Langmead...; http://dir.nhlbi.nih.gov/papers/lmi/epigenomes/sissrs/ See also this thread for ChIP-Seq, until I get tim...3516 days ago
Software packages for next gen sequence analysis
...ory. Uses a Burrows-Wheeler-Transformed (BWT) index. Link to discussion thread here. Written by Ben Langmead...Sequence Reads. BED file input. Raja Jothi @ NIH. Perl. **See also this thread for ChIP-Seq, until I get tim...3239 days ago
- +3 more Top-level pages
Wire posts
Video
DNA is packaged in a chromosome experiment
...ackaging in eukaryotes, consisting of a segment of DNA wound in sequence around four histone protein cores.[1] This structure is often compared to thread wrapped around a spool.[2] N...3874 days ago
How DNA is Packaged (Advanced)
Each chromosome consists of one continuous thread-like molecule of DNA coiled tightly around proteins, and contains a portion of the 6,400,000,000 basepairs (DNA building blocks) that...3874 days ago
Bio-Scripts
BASH script for SelfBLAST a genome
...on settings FASTAFILE=MergedContigs.fasta MYDB=myDB OUTFILE=seeRES THREAD=20 SEQ="" echo "User $USE...Sting"; blastn -task megablast -query $SEQ -db $MYDB -evalue 1e-5 -num_threads $THREAD -max_target_seqs 1 -...2649 days ago
- ...ild environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -...ild environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -...ild environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -...
2148 days ago
- +4 more Bio-Scripts
Tags
Many-Core Engine (MCE) for Perl example
MCE spawns a pool of workers and therefore does not fork a new process per each element of data. Instead, MCE follows a bank queuing model. Imagine the line being the data and bank-tellers the parallel workers. MCE enhances that model by adding the ability to chunk the next n elements from the in...Tags: Bioinformatics, Programming, Perl, MCE, Parallel, Core, Thread, Fork
2648 days ago
- +2 more Tags
Comments
Comment on "LAMSA: fast split read alignment with long approximate matches"
➜ LAMSA git:(master) ./lamsa aln Usage: lamsa aln [options] <ref.fa> <read.fa/fq> Algorithm options: -t --thread [INT] Number of threads. [1] -l --seed-len [INT] Length of seeding...2120 days ago
Comment on "Installing Perl environment on Linux"
...-----------------------|----------------- perl-threaded-5.22.0 | 10 11.2 MB biocond...ge perl-app-cpanminus: 1.7039-2 bioconda perl-threaded: 5.22.0-10 bioconda Procee.../myLocalPerl/lib/site_perl/5.26.2/x86_64-linux-thread-multi /home/urbe/anaconda3/en...2123 days ago
