Results for "Tk"
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...5.16Supported Operating Systems MS Windows XP and later 32 and 64 bit. Linux 32 and 64 bit - minimum glibc 2.5, GTK+ 2.10, libstdc++6. ...3911 days ago
Next Generation Sequencing (NGS) Tutorials
...tion sequencing data. http://www.ncbi.nlm.nih.gov/pubmed/23657089 GATK: a Toolkit for Genome Analysis http://www.broadinstitute.org/gatk/ Metagenomics:http://www.nbi...3481 days ago
- ...three statistically-based variant detection tools:* SAMtools: Mpileup* GATK: Unified Genotyper* FreeBayes...ten allow more control over branching and iteration logic. WGS/exome GATK-based variant calling pipelin...
3647 days ago
RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
...mizable and extensible. In this paper, we describe the RAST tool kit (RASTtk), a modular version of RAST that enables researchers to build custom annotation pipelines. RASTtk offers a choice of software f...2924 days ago
- ...r interface (GUI) program which runs on Linux, Unix, Mac OS X (tested on version 10.2.4 only) and Microsoft Windows platforms and is written in Perl/Tk.
2628 days ago
- GTDB-Tk is a software toolkit for assigning objective taxono...applied to isolate and single-cell genomes. The GTDB-Tk is open source and released u...er the GNU General Public License (Version 3). GTDB-Tk is under active developm...
2077 days ago
- ...K number assignment of KEGG GENES using SSEARCH computation. BlastKOALA and GhostKOALA assign K numbers to the u...d Pathogen Checker in KEGG Pathogen are special interfaces to the BlastKOALA server and can be execute...
1965 days ago
Osprey: Network Visualization System
...Java to operate and is compatible with Windows, Linux, and Apple operating systems. These works were published in Breitkreutz, BJ., Stark, C., Tyers M...1926 days ago
geck: trio-based comparative benchmarking of variant calls
Determine the accuracy of our model by comparing the precision and recall of GATK Unified Genotyper and Haplotype Caller on the high-confidence SNPs of the NIST Ashkenazim trio and...1806 days ago
Snakemake workflow: dna-seq-gatk-variant-calling
This Snakemake pipeline implements the GATK best-practices workflow for calling small genomic variants.1740 days ago
