Results for "Tool"
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Tools to Predict the Impact of Missense Variants !
...arge number of in silico tools have been employed for the t...as optimized methods of combining tool scores, such as Condel and Lo...ter of new variants. Study of 10 tools on five datasets that such a...t Depletion (CADD)“CADD is a tool for scoring the deleteriousne...2197 days ago
Protein-Protein Interaction Sites Predictions !
...y biological and clinical observations. Following are the list of tools commonly used to PPIs predic...ts DNA binding proteins for proteins with known 3D structure. PFplus A tool for extracting and displaying...2196 days ago
Gap filling or Contigs extensions tools !
There are many tools to perform gap filling using Illumi...with GapFiller". There are also some tools like GAPresolution that can...//www.baseclear.com/landingpages/basetools-a-wide-range-of-bioinformati...particular, take a look at the IMAGE tool: http://genomebiology.com/201...2159 days ago
- The benchmark module is a great tool to know the time the code takes to run. The output is usually in terms of CPU time. This module provides us with a way to optimize our code. With...
2074 days ago
- ...e bit of a tricky beast to get going, so I decided to download the source code and compile that.I will be compiling this code as 'root' as a system tool in /usr/local/src, so do...
2057 days ago
Bioinformatics in Africa:- Part 1
...he innovation. • Start training researchers to use bioinformatics as an indispensable tool to research. &bull...1184 days ago
Short-read assembly using Spades !
If we only had Illumina reads, we could also assemble these using the tool Spades. You can try this here, or try it later on your own data. Get data We will use the same Illumina...819 days ago
Bioinformatics tools for genome assembly !
There are numerous genome assembly tools available, each with its str...f some widely used genome assembly tools as of my last update in Sept...stantly evolving, and new assembly tools may have emerged since my la...embled. When selecting an assembly tool, consider the specific requir...280 days ago
Steps to find all the repeats in the genome !
...ome from 2 to 9 length using a Perl script, you can use the RepeatMasker tool with the "--length" option[0]...can parse this file to extract the information you need. There is a Perl tool called "one_code_to_find_them...242 days ago
Mitochondrial genome assembly tools !
...mitochondrial genome assembly tools: MitoFinder: Mitofinder is...reads MITObim: MITObim is a tool specifically developed for th...NOVOPlasty is a user-friendly tool designed for de novo assembly...mitochondrial genome assembly tool, it's important to consider t...236 days ago
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