Results for "Transcriptomes"
Users
About me: ...s evolution. I (We) develop certain computational pipeline, and algorithms to harness the huge amount of biological data (genomes, epigenomes, transcriptomes, proteomes, etc.) to answer s...23 days ago
Blogs
List of genome announcement, notes and reporting journals
...cruz.br/ 6. Molecular Ecology Resources, Wiley, Genomic resources note, Impact factor 3.7, Short notes on newly assembled and annotated transcriptomes, genome fractions or whole ge...2021 days ago
10 NGS services companies around the globe !
...d industrial areas. It also provides next generation sequencing services including genomes, targeted (re)-sequencing, human sample sequencing, transcriptomes, metagenomes, regulomes, pre-...1272 days ago
Bookmarks
RNA-Seq De novo Assembly Using Trinity
...t the Broad Institute and the Hebrew University of Jerusalem, represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data. Trinity co...2978 days ago
ASplice: a scalable and memory-efficient algorithm for de novo transcriptome assembly
With increased availability of de novo assembly algorithms, it is feasible to study entire transcriptomes of non-model organisms. While algorithms are available that are specifically desi...2146 days ago
- +3 more Bookmarks
Files
- ...we present protocols for five different assembly pipelines that comprise the SPAdes package and that are used for assembly of metagenomes and transcriptomes as well as assembly of putati...
837 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
...ion in graphs with different k values. So, it will perform better than other assemblers. est2assembly 1.13 – Assembly and Annotation of Transcriptomes for any SpeciesThe est2a...2699 days ago
Top-level pages
Commercial and public next-gen-seq (NGS) software
...publication Alta-cyclic - "a novel Illumina Genome-Analyzer (Solexa) base caller" Transcriptomics ERANGE - Mapping and Quantifying Mammalian Transcriptomes by RNA-Seq. Supports Bowtie,...3532 days ago
Software packages for next gen sequence analysis
...lication * Alta-cyclic - "a novel Illumina Genome-Analyzer (Solexa) base caller" Transcriptomics * ERANGE - Mapping and Quantifying Mammalian Transcriptomes by RNA-Seq. Supports Bowtie,...3255 days ago
- +2 more Top-level pages
Wire posts
Tags
- RapClust is a tool for clustering contigs from de novo transcriptome assemblies. RapClust is designed to be run downstream of the Sailfish or Salmon tools for rapid transcript-level quantification. Specifically, RapClust relies on the fragment equivalence classe...
Tags: RapClust, Accurate, Lightweight, Clustering, de novo, Transcriptomes, Fragment, Equivalence, Classes
2053 days ago
- CroCo is a program to detect cross contamination events in assembled transcriptomes using sequencing reads to determine the true origin of every transcripts.Such cross contaminations can be expected if several RNA-Seq experiments were prepared during the same period at the same lab, or by the sam...
Tags: CroCo, program, detect, potential, cross, contaminations, HTS, assembled, transcriptomes, expression, quantification
1958 days ago
- +1 more Tags
Comments
Comment on "Comparative genomics educational material and papers bookmarks"
...ea anemone species (Order: Actiniaria), we performed a comprehensive and comparative study using 10 newly sequenced transcriptomes, as well as three publically available transcriptomes, to identify the origins, exp...2747 days ago
