HTTDB - Horizontally transferred transposable elements database
...recognition of HTT as a common phenomenon in recent years, it is still difficult to draw major conclusions about HTT patterns, such as where in the tree of life these cases are more...2288 days ago
MGcV: the microbial genomic context viewer for comparative genome analysis
...based visalization tool tailored to facilitate small scale genome analysis. To start using MGcV: Supply your genes/genomic segments/phylogenetic tree of interest in the input-box...2282 days ago
MUMmer4: A fast and versatile genome alignment system
MUMmer4, a substantially improved version of MUMmer that addresses genome size constraints by changing the 32-bit suffix tree data structure at the core of MUMmer to a 48-bit suffix...2277 days ago
alienness : Rapid Detection of Candidate Horizontal Gene Transfers across the Tree of Life
Horizontal gene transfer (HGT) is the transmission of genes between organisms by other means than parental to offspring inheritance. While it is prevalent in prokaryot...2240 days ago
d3Network:Tools for creating D3 JavaScript network, tree, dendrogram, and Sankey graphs from R.
Mike Bostock’s D3.js is great for creating interactive network graphs with JavaScript. The d3Network package makes it easy to creat...2215 days ago
DendroPy: a Python library for phylogenetic computing
...nctions for the simulation, processing, and manipulation of phylogenetic trees and character matrices, and...forming some useful phylogenetic operations, such as data conversion and tree posterior distribution summar...2198 days ago
MITObim - mitochondrial baiting and iterative mapping
This document contains instructions on how to use the MITObim pipeline described in Hahn et al. 2013. The full article can be found here. Kindly cite the article...2183 days ago
2168 days ago
Snippy: Rapid haploid variant calling and core SNP phylogeny
...a single folder. It can then take a set of Snippy results using the same reference and generate a core SNP alignment (and ultimately a phylogenomic tree). snippy --cpus 16 --outdir...2019 days ago
2077 days ago