Results for "Trim"
Blogs
BBTools for bioinformatician !
...nknown primers Code: $ reformat.sh in=reads.fq out=trimmed.fq ftr=19 This will trim all but the first 20 bases (a...ra.fa.gz" and get them all (this will increase the amount of overtrimming, though it should still b...2285 days ago
- ...y-plugins/ParaFly-0.1.0' make[2]: Leaving directory '/home/urbe/Tools/trinityrnaseq-Trinity-v2.6.6/trinity-plugins/ParaFly-0.1.0' ln -sf Trimmomatic-0.36 Trimmomatic make[1]: Leaving dire...
2147 days ago
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Bookmarks
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
...line which runs in four steps: Detect overlaps in high-noise sequences using MHAP Generate corrected sequence consensus Trim corrected sequences Assemble trimmed corrected sequences Rea...2928 days ago
Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
...INT: kmer_length (<=32, default: 23) -od STRING: output_file_directory (default: ./) -t INT: number of threads to use (default: 1) -trim : allow trimming (default: false) -maxco...1566 days ago
Top-level pages
- ...ese will break pairing, if the input is paired. Quality trimming (either or both ends) Quality filtering Fixed-length trimming Generation of histograms...64: reformat.sh in=x.fq out=y.fq qin=33 qout=64 Quality-trim paired reads to Q10 on the le...
2728 days ago
Gap filling or Contigs extensions tools !
...ired reads that align extending these new paired-end reads. c. Construct a new assembly C' from C and the new reads identified in (a) and (b). d. Trim C' so it does not extend more...2179 days ago
Wire posts
Bio-Scripts
Perl script to extract fasta sequence by matching name/ids !!
#!/usr/bin/perl use strict; use warnings; use Text::Trim qw(trim); #Usage perl extractSeqbyID.pl ids.txt...pen OUT, ">$out" or die; open FILE, "$fasta" or die; while () { trim($_); s/>//g; my ($i...2889 days ago
Installing Porechop on Ubuntu !
...[--require_two_barcodes] [--untrimmed] [--discard_unassigned]...] [--end_size END_SIZE] [--min_trim_size MIN_TRIM_SIZE]...(default: 4) --extra_end_trim EXTRA_END_TRIM...2120 days ago
- +4 more Bio-Scripts
Comments
- ...master) ✗ ./canu usage: canu [-version] [-citation] \ [-correct | -trim | -assemble | -trim-assemble] \ [-s <assembly-...to only a specific stage, use: -correct - generate corrected reads -trim - generate trimmed reads -ass...
2113 days ago
- ...fterQC AfterQC - Automatic Filtering, Trimming, Error Removing and Quali...y data and that is used to filter, reformat and trim next-generation sequence data...QA now also supports Ion Torrent and 454 data. Trim galore! Trim_galore ...
2152 days ago
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