Source Code and Pseudo Code !!
...equence," "selection, " "iteration," and a case-type statement. In C, "sequence s...e "while," " do," and the "for," while the case-type statement is satisfied by the...unction, parameters it is expecting (number and type), and the type of the data it...2672 days ago
Quick next generation sequencing (NGS) terms definition
...ead pairs signal potential SVs. The sequence signature produced by these type of reads is known as read-pai...ence genome by breaking into two sub-reads is called a split-read. These types of reads also indicate a pot...2535 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...riptome into disjoint transcript clusters; uses sig-mers, a special type of k-mers) Software (C+...verlap detector (uses the concept of “minimazers”, a special type of k-mers) Software (C)...2384 days ago
Single Cell RNAseq data analysis tutorial !!
...tp://biorxiv.org/content/early/2016/11/15/087775 Single cell transcriptomes identify human islet cell signatures and reveal cell-type-specific expression changes in type 2 diabetes http://genome.csh...2364 days ago
Edit distance application in bioinformatics !
...cher is an implementation of the Wagner-Fischer edit distance, which is similar to the Levenshtein, but applies different weights to each edit type. Text::Brew is an imple...2354 days ago
2304 days ago
Installing Bio::SCF perl module
...compatible... yeschecking for sys/types.h... yeschecking for sys/sta...or strings.h... yeschecking for inttypes.h... yeschecking for stdint....I/usr/local/include -fPIC -MT traceType.o -MD -MP -MF ".deps/traceTyp.../share/perl/5.22/ExtUtils/xsubpp" -typemap "/usr/share/perl/5.22/ExtU...2231 days ago
Creating conda environment for python2.7
...an environment: conda create --name myenv NOTE: Replace myenv with the environment name. When conda asks you to proceed, type y: proceed ([y]/n)?...2203 days ago
Learning Python Programming - a bioinformatician perspective !
...guage so the program does not need to be compiled. Interpreter parses the program code and generates the output. Python is dynamically typed, so the variables types are defined automatically....2196 days ago
2076 days ago