Results for "Type"

Bio-Scripts

  • Installing NextSV on Ubuntu !

    ...mpile features - done -- No build type specified. Using 'release' -...MP: -fopenmp -- Looking for sys/types.h -- Looking for sys/types....ct src/CMakeFiles/sniffles.dir/Genotyper/Genotyper.cpp.o /home/urbe/...g: format ‘%i’ expects argument of type ‘int’, but argument 3 has typ...

    2119 days ago

  • Install Python locally on shared Linux server !

    ...hon/2.7.11/Python-2.7.11.tgz tar zxfv Python-2.7.11.tgz find ~/python -type d | xargs chmod 0755 cd Pyth...directory. #Here comes another important step. By the default, if we type python command, it will use t...

    2119 days ago

  • Downloading GATK !

    ...Dgatk-4.0.2.1.zip&response-content-type=application%2Foctet-stream [f...Dgatk-4.0.2.1.zip&response-content-type=application%2Foctet-stream R...nd compares it to the provided genotypes CheckPileup...Merges one or more HaplotypeCaller GVCF files into a singl...

    2096 days ago

  • Install HTSLIB on Ubuntu !

    ...sposition=attachment%3B%20filename%3Dhtslib-1.9.tar.bz2&response-content-type=application%2Foctet-stream [f...sposition=attachment%3B%20filename%3Dhtslib-1.9.tar.bz2&response-content-type=application%2Foctet-stream R...

    2040 days ago

  • Installing Platypus on Ubuntu !

    ...-O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I./ -Ic -I/home/urbe/...-O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I./ -Ic -I/home/urbe/...command line option ‘-Wno-incompatible-pointer-types-discards-qualifiers’ gcc -p...

    2040 days ago

  • Collecting arguments with R

    #! /usr/bin/Rscript ## Collect arguments args

    2024 days ago

  • Samtools commands for bioinformatician !

    ...d indels # -c : find snp # -v : output only potential variants bcftools view -c -v sal_vars.bcf > sal_vars.vcf ### note: new command is "call". type "bcftools" to see current ver...

    1624 days ago

  • Installing ggplot2 and its dependencies on Ubuntu !

    ...lipsis_0.3.0.tar.gz' Content type 'application/x-gzip' length 7...rtthat_0.2.1.tar.gz' Content type 'application/x-gzip' length 1...ib/cli_2.0.1.tar.gz' Content type 'application/x-gzip' length 1...iles... yes checking for sys/types.h... yes checking for sys/s...

    1571 days ago

  • Pack a perl program with their dependencies on Ubuntu !

    ...q.push(['_setAccount', 'UA-42478605-1']); _gaq.push(['_trackPageview']); (function() { var ga = document.createElement('script'); ga.type = 'text/javascript'; ga.async...

    1532 days ago

  • Basic docker commands !

    ...MT:~/Downloads/testDock$ sudo docker system df TYPE TOTAL...MT:~/Downloads/testDock$ sudo docker system df TYPE TOTAL...overlay2 Backing Filesystem: Supports d_type: true Native Overlay Diff:...

    1530 days ago