Results for "Uniprot"
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ProteoClade: A taxonomic toolkit for multi-species and metaproteomic analysis
...a are analyzed in the absence of a reference database (ex: using PEAKS, PepNovo). ProteoClade scales from two organisms to every organism in UniProt. Please refer to the com...1502 days ago
- ...least 40 types of IDs for more than 60 species. The 98 different namespaces supported for human include Ensembl, Refseq, Illumina, Entrezgene and Uniprot identifiers. All namespaces a...
344 days ago
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List of bioinformatics open source projects/software.
...for rapid prototyping Bio4j http://bio4j.com/ Bio4j is a bioinformatics platform and graph based database built around most data available in UniProt KB(Swiss-Prot + TrEMBL), Gene...3750 days ago
Apps for Busy Bioinformatics Researchers !!!
...eins on the go. Key features (Also in website): Search proteins by UniProt IDs, gene name or keywords C...nsSNPs in dbSNP and 1000 Genomes collection, as well as variants from UniProt and PMD. SAASs come from >...3534 days ago
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Command line to create blast uniref database !
...orted), which is available from the NCBI's FTP site: ftp://ftp.ncbi.nlm.nih.gov/blast/executables/release/2.2.26/. wget ftp://ftp.uniprot.org/pub/databases/uniprot/uniref/uniref90/uniref90.fast...943 days ago
Downloading mmseqs databases !
...Aminoacid yes https://www.uniprot.org/help/uniref - UniRef90...Aminoacid yes https://www.uniprot.org/help/uniref - UniRef50...yes https://www.uniprot.org/help/uniprotkb - UniProtKB/TrEMBL Ami...th/swissprot: mmseqs databases UniProtKB/Swiss-Prot outpath/swisspro...935 days ago
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Comment on "Command line to create blast uniref database !"
wget ftp://ftp.uniprot.org/pub/databases/uniprot/uniref/uniref90/uniref90.fasta.gz gunzip -v uniref90.fasta.gz makeblastdb -in uniref90.fasta -dbtype prot -input_type fasta -out uniref90.fasta939 days ago
Comment on "Coronavirus Resources !"
Curated functional and classification data on the SARS-CoV-2 protein entries and associated protein receptors. https://www.covid19dataportal.org/proteins?db=uniprot-covid191417 days ago
