SqueezeMeta: a fully automated metagenomics pipeline, from reads to bins
SqueezeMeta is a full automatic pipeline for metagenomics/metatranscriptomics, covering all st...val of individual genomes via binning procedures. Thus, SqueezeMeta features several unique char...1359 days ago
vsFilt: A tool to improve virtual screening by structural filtration of docking poses
The vsFilt is the first open application for post-docking structural filtration, available as a web-server. The new...to detect a wide range of interaction types that are known to be involved in molecular r...1259 days ago
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UniqueKmer: Generate unique KMERs for every contig in a FASTA file
Generate unique k-mers for every contig in a FASTA file. Unique k-mer is consisted of k-mer keys (i.e. ATCGATCCTTA...FASTA file consisting of many contigs, and extract unique k-...from sequencing data. https://github.com/OpenGene/UniqueKMER873 days ago
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homologizer: Phylogenetic phasing of gene copies into polyploid subgenomes
This tutorial describes the usage of homologizer to phase gene copies into polyploid subgenomes. The tutorial is an abbreviated version of a soon-to-be published paper in Methods in Molecular B...339 days ago
doubletrouble: identify duplicated genes from whole-genome protein sequences and classify
doubletrouble aims to identify duplicated genes from whole-genome protein sequences and classi...assifying gene pairs, users can also classify genes, so that each gene is assigned a unique mode...64 days ago
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