List of Bioinformatics Software Tools for Next Generation Sequencing
Commercial tools Strand NGS offers many different tools including...ype- “that directly tests the molecular mechanisms through which gene...(condenser file), VAAST file (both unique to VAAST) VEP Descriptio...dentification of causal variants in molecular d...2911 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discovered that many...have attempted to relate palindrome formation to molecular mechanisms involved in double...rsed 180°), still reads CGAAGC. The European Molecular B...2214 days ago
2871 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequence reads and a file of quality-valu...ller is a stand-alone program for closing gaps within pre-assembled scaffolds. It is unique in o...2688 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in two taxa which have originated from two different ancestors. ancestor -- Any organism, population, or species from which some...2464 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses pseudoalignment fo...enotyping of known SNV/SNP variants directly from raw NGS sequence reads by counting unique ...2373 days ago
2308 days ago
PerlOneLiner for Bioinformatician
FILE SPACING------------ # Double space a fileperl -pe '$\="\n"'perl -pe 'BEGIN { $\="\n" }'p...2 == 0' # Print all lines that repeatperl -ne 'print if ++$a{$_} == 2' # Print all unique line...2304 days ago
List of visualization tools for genome alignments
Genome browsers are useful not only for showing final results but also for improving anal...www.htslib.org/ SEWAL Uses a locality-sensitive hashing algorithm to enumerate all unique sequ...2286 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
Strand NGS is a biologist friendly NGS analysis tool that allows biologists to analyze th...nd Life Sciences, has over 11 years experience in molecular biology, next-generation sequ...t and prenatal testing. Dr. Suman holds a Ph.D in Molecular a...2266 days ago