mScaffolder: A comparative genome scaffolding tool
...ol based on MUMmer mScaffolder scaffolds a genome using an existing high quality genome as the reference. It aligns the two genomes using nucmer utility from MUMmer and then orders a...2147 days ago
Miropeats: discovers regions of sequence similarity amongst any set of DNA sequences
...ny different biological sequence analyses but it is limited by the verbosity of traditional alignment presentation styles. Miropeats enhances the utility of conventional DNA sequence...1710 days ago
NextDenovo: string graph-based de novo assembler for TGS long reads
NextDenovo is a string graph-based de novo assembler for TGS long reads. It uses a "correct-then-assemble" strategy similar to canu, but requires significantl...1578 days ago
JCVI:Python utility libraries on genome assembly, annotation and comparative genomics
Collection of Python libraries to parse bioinformatics files, or perform computation related to assembly, annotation, and comparative genomics. https://github.com/tanghaibao/jcvi More at https://github.com/tanghaibao/jcvi/wiki1506 days ago
tinycov: standalone command line utility written in python to plot coverage from a BAM file
Tinycov is a small standalone command line utility written in python to plot the coverage of a BAM file quickly. This software was inspired by Matt Edwards' genome coverage plott...1500 days ago
1283 days ago
Kmer: a suite of tools for DNA sequence analysis
...elated (sim4cc) species. Optimized for high-throughput batched alignment. LEAFF: LEAFF (ahem, Let's Extract Anything From Fasta) is a utility program for working with mult...988 days ago