Results for "Variant Calling"
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DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignment and for variant calling. We have evaluated the performance of DAVI against existing state-of-the-art tool sets and found that i...1161 days ago
Next Generation Sequencing (NGS) Tutorials
...a pipeline for read cleaning, mapping and SNP calling using Next Generation Sequenc...aining-activities-schedule/archive-2013.html Variant Detection (Model organism) Ad...1CuKkKylVDb03tnN7RSWl5EUzleetn0ctjmvaidPKLxM Variant Detection Introductory tutori...3502 days ago
- ...e using a Cuffdiff analysis. Variant Detection Basic Galaxy Tutorial Variant Detection tutorial In this...WGS/exome GATK-based variant calling pipeline This is a basic variant-calling and annotation pipeline devel...an exome branch configured for variant calling in exome data.To run...
3668 days ago
7th International Conference on Bioinformatics and Computational Biology (BICoB)
In recent years, computational biology and medical informatics have seen significant a...ation analysis, population simulation, haplotyping, marker discovery, genotype calling. Systems biology: S...3513 days ago
- Google Genomics provides an API to store, process, explore, and share DNA...ads, reference-based alignments, and variant calls, using Google's cloud i...rastructure. Store alignments and variant calls for one genome or a mil...plore data by slicing alignments and variant...
3503 days ago
Simons Genome Diversity Project
Complete genome sequences from more than one hundred diverse human populations All ge...uence, and determined genotypes on a single-sample basis to avoid preferential calling of genotypes from populations...1107 days ago
- This software is designed to identify both simple and complex rearrangements from pair...nbsp;with proper parameters. It's also possible to ran it on multiple cores by calling different sub-functions separ...
3002 days ago
- DISCOVAR is a new variant caller and DISCOVAR de novo a new genome assem...as not previously possible. DISCOVAR can call variants on a region by region basis,...tially tiling an entire large genome. DISCOVAR variant calling is under active development a...
2954 days ago
- Assembly Likelihood Evaluation (ALE) framework that overcomes these limitations, systema...a, ALE recovers 215 of 222 (97%) single nucleotide variants in a training set from a GC-...e genome, surpassing even Pacific Biosciences' own variant...
2946 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing reads to a...insertions and deletions. To support the growing interest in larger structural variant...2921 days ago
