Bioinformatics PhDs - Cover Letter
OverviewThe reception your cover letter will receive is mo...their third book has been published and Yale comes calling. They often don't seem...and, perhaps more to the point, Yale rarely "comes calling." An even greater burde...3366 days ago
Calling narrow and broad peaks from ChIP-Seq data
Know about the state-of-the-art algorithms implemented in Strand NGS for detecting the...ification (broad peaks) from ChIP-Seq data.Read the benchmarking study on Calling narrow and broad peaks from C...3198 days ago
Computer simulation of genetic mechanism !!
Computer simulation is the discipline of designing a model of an actual or theoretical p...s/tillier/software.htm#3 SimRare Rare variant simulation and analysis tool...f the introduction and evolution of (rare) genetic variant...2975 days ago
Structural variation: the hidden genomic treasure
Genome re-sequencing projects have revealed substantial amounts of...p;The mostāstudied structural variants are copy number variations (...equences. Structural variants (SVs) such as deletions, ins...ew detection methods, smaller variants (between 50 and 1000 base pa...2703 days ago
Software and Tools to detect structure variation with long reads !!
...-SV: It identifies structural variants from next-generation paired...y is an implementation of two variant-identification approaches des...following. Unified variant calling user interface with built-in...compute support Small indel calling (2-49 bp) Improved inversion...2608 days ago
String graph based genome assembly software and tools !
In graph theory, a string graph is an intersection graph of&n...ent. The SGA assembly has three distinct phases. The first phase corrects base calling errors in the reads. The seco...2329 days ago
Bioinformatics tools developed for Oxford Nanopore data analysis !
...d genome assembly softwarehttps://github.com/jts/nanopolish nanoporeVariant-detection tool for nanopore s...ps://sourceforge.net/p/rpore/wiki/Home/ PoreSeqError-correction and variant-calling softwarehttps://github.com/ts...2321 days ago
1549 days ago
Bioinformatics tools for telomere to telomere assembly !
...– k-mer-based assembly and variant calling evaluation for improved conse...e amplicon data; performs allele calling while detecting polymorphic s...ving potential chimeric sequence variants (Yuanyuan Cheng @Yuanyu...aring, and annotating structural variant (SV) calls in VCF format (Aar...992 days ago
Classification of SARS-CoV2 Variant !
The scientists established some guidelines for determining whether a variant is a legitimate branch of an existing lineage: The variant should be transmitted from its original location to another "geographically disti...891 days ago