LAMSA: fast split read alignment with long approximate matches
...esigned two-step strategy. That is, LAMSA initially splits the read into relatively long fragments and co-linearly align them to solve the small variations or sequencing errors, and mit...2182 days ago
2133 days ago
2040 days ago
1932 days ago
Synteny and Rearrangement Identifier (SyRI)
...yRI identifies syntenic path (longest set of co-linear regions), structural rearrangements (inversions, translocations, and duplications), local variations (SNPs, indels, CNVs etc) with...1461 days ago
1397 days ago
mixtureS: a novel tool for bacterial strain reconstruction from reads
...can de novo identify bacterial strains from shotgun reads of a clonal or metagenomic sample, without prior knowledge about the strains and their variations. Tested on 243 simulated data...1353 days ago
Sibelia: A comparative genomics tool
Sibelia: A comparative genomics tool: It assists biologists in analysing the genomic variations that correlate with pathogens, or the genomic changes that help microorganisms adapt in d...1353 days ago