CGView - Circular Genome Viewer
CGView is a Java package for generating high quality, zoomable maps of circular genome...amples of the various output types, see the CGView gallery. http://wishart.biology.ualberta.ca/cgview/gallery.ht...2145 days ago
PureCN: copy number calling and SNV classification using targeted short read sequencing
This package estimates tumor purity, copy number, and loss of heterozygosity (LOH), an...ssification using targeted short read sequencing.” Source Code for Biology and Medicine, 11, 13. do...2096 days ago
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Biotite: A general framework for computational biology
The package is open source and freely available at GitHub (https://github.com/biotite-.... The Biotite package bundles popular tasks in computational biology into an unifying framework, w...1965 days ago
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EXCAVATOR: detecting copy number variants from whole-exome sequencing data
EXCAVATOR, for the detection of copy number variants (CNVs) from whole-exome sequ...from whole-exome sequencing data.EXCAVATOR has been published on Genome Biology (http://genomebiology.com/2013/14/10/R120/abstract)...1947 days ago
Osprey: Network Visualization System
Osprey is a software platform for the visualization of complex biological inte...Stark, C., Tyers M. "Osprey: A Network Visualization System." Genome Biology 2003 4(3):R22 [Genome Biology] [PDF] [PubMed]&nbs...1932 days ago
Bioinformatics web development course
This web development course, targeted at Biology and Bioinformatics students, aims at teaching from scratch all the skills needed to setup a fully working Linux web server and to develop an...1641 days ago
phyloXML: XML for evolutionary biology and comparative genomics
phyloXML (example) is an XML language designed to describe phylogenetic trees (or networks) and associated data. PhyloXML provides elements for commonly...1609 days ago
Machine learning training and courses in bioinformatics !
Machine learning techniques have been successful in analyzing biological data because...v models, and Bayesian networks) for biological sequence analysis and systems biology. Other machine learning techn...1586 days ago