LSC :a long read error correction tool
Getting Started These simple steps will help you integrate LSC into your transcript...p;for running LSC. Download and set-up the LSC package. Follow the tutorial to see how LSC works on...2101 days ago
2038 days ago
Platypus: A Haplotype-Based Variant Caller For Next Generation Sequence Data
Platypus is a tool designed for efficient and accurate variant-detection in hig...encing trials in the Mainstreaming Cancer Genetics programme. Tutorial https://github.com/andyr...2017 days ago
BLAST options, setting and defaults
BLAST stands for Basic Local Alignment Search Tool and was developed by Altschul et al. (1990) and significantly improved by Altschul et al. (1997). It is a ve...1971 days ago
Genome Annotation using MAKER tutorial !
MAKER is a great tool for annotating a reference genome using empirical and&nbs...tions. GMOD, the umbrella organization that includes MAKER, has some nice tutorials online for running MAKER. Ho...1961 days ago
Genome assembly tutorial "Genome Assembly for short and long reads"
In this lab we will perform de novo genome assembly of a bacterial genome. You will be guided through the genome assembly starting with data quality control, through to...1931 days ago
NxRepair: error correction in de novo assemblies using Nextera Mate Pair Reads
NxRepair is a python module that automatically detects large structural errors in de...nd the correct, unaffected contigs. https://nxrepair.readthedocs.io/en/latest/tutorial.html nxrepai...1926 days ago
Bioinformatics web development course
This web development course, targeted at Biology and Bioinformatics students, aims a...oinformatics. No previous programming knowledge is assumed. By following this tutorial you will learn the fundamenta...1639 days ago
Seq: A high-performance, Pythonic language for bioinformatics
Seq is a programming language for computational genomics and bioinformatics....le to (and in many cases better than) C/C++. Learn more by following the tutorial or from the cookboo...1623 days ago
Machine learning training and courses in bioinformatics !
Machine learning techniques have been successful in analyzing biological data becaus...at http://homes.sice.indiana.edu/yye/lab/teaching/spring2017-I529/ More tutorial at http://calla.rnet.m...1584 days ago