Understanding your reads and mapping !
One of the best tutorial for beginners ... https://bioinformatics-core-shared-training.github.io/cruk-summer-school-2017/Day1/Session4-seqIntro.html1556 days ago
shinyCircos: an R/Shiny application for interactive creation of Circos plot
shinyCircos, a graphical user interface for interactive creation of Circos plot. shi...Circos plots could be easily generated and decorated with simple mouse-click. Tutorial http://shinycircos.ncpgr...1547 days ago
Best Practices for Variant Calling with the GATK
The presentations below were filmed during the March 2015 GATK Workshop,...mats and methods Joel Thibault PDF Video 03/19/15 Introduction t...GATK Geraldine Van der Auwera PDF Video 03/19/15 Mapping, proce...alling cohorts Louis Bergelson PDF Video...1532 days ago
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DADA2: Fast and accurate sample inference from amplicon data with single-nucleotide resolution
The DADA2 tutorial goes through a typical workflow for paired end Illumina Miseq data: raw amplicon sequencing data is processed into the table of exact amplicon...1269 days ago
Genome assembly training tutorial at Galaxy !
In this tutorial we assemble and annotate the genome of E. coli strain C-1. This strain is routinely used in experimental evolution studies involving bacteriophages. For ins...1223 days ago
Calling variants in non-diploid systems
The main challenge associated with non-diploid variant calling is the difficulty in distinguishing between the sequencing noise (abundant in all NGS platforms) and true...1041 days ago
k-mers tutorial - classification and taxonomy
DNA k-mers underlie much of our assembly work, and we (along with many others!) have spent a lot of time thinking about how to store k-mer graphs efficiently, ...981 days ago
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