Results for "Whole genome"
Blogs
LiftOver is a necesary step to bring all genetical an...LiftOver can have three use cases: (1) Convert genome position from one genome assembly to another genome as...ber from one build to another (3) Convert both genome position and dbSNP rs number...2164 days ago
- Download this https://github.com/trinityrnaseq/trinityrnaseq/releases/tag/Trini...ameter **, this functionality continues to be under development) # # --genome_guided_bam :genome guided mode, provide path to...
2138 days ago
List of motif discovery tools !
In genetics, a sequence motif is a nucleotide or amino-acid sequence pattern that...tes. PEDANT -- Protein Extraction, Description and ANalysis Tool Conduct genome wide functional and structura...1998 days ago
CANU genome assembly parameters !
Choose the appropriate parameters to run Canu and run it....-p \ -d \ genomeSize=[g|m|k] \...s. canu -p test_asmbl \ -d asm_test3 \ genomeSize=2m \ -maxThreads=2...1949 days ago
List of tools frequently used while genome assembly
List of tools frequently used while genome assembly: I have used the following assemblers Spades (v. 3....nopolish (v. 0.8.3) I have used the following tools to assess genome assembly characteristics A...1934 days ago
Software for genome assembly !
List of bioinformatics tools/Software Website References for genome assembly: 1 Falcon https://github.com/PacificBiosciences/pb-assembly 2 Canu assembler http://canu.readthedocs.io/en/latest/...1348 days ago
10 NGS services companies around the globe !
...ystems. The company’s genome services are suitable for cu...ion sequencing services including genomes, targeted (re)-sequencing, h...ation sequencing services such as whole genome, de novo, exome, target...dia. Popular mentions – MedGenome (India), DNA Link, Inc. (Sout...1264 days ago
Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-base...; algorithm that leverages a pangenome reference built from haplotype-resolved genome assemblies in conjunction wit...riptome data (Richard Kuo @GenomeRIK)● pbaa (PacBio A...long transcriptomic reads to a genome, guided by a database of exon...996 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...hod for small to medium-sized genomes. What is de novo genome assembly?The method of taking...the DNA originated relates to genome assembly. No previous knowled...ew/42542/trimmomatic-command Genome Assembly:The object of this p...genomes from read mappings. Genome finishing tools:Semi-automate...1209 days ago
Ancient whole genome duplication (WGD) detection tools !
...da3/envs/wgd/make -j 4 make insatall Take the sugarcane genome Saccharum spontaneum L as an example. The genome is 8-ploid with 32 chromosome...d density plot wf1: Ks standard analysis procedure of the whole genome paranome (paranome), ca...1160 days ago
