Results for "Whole genome re-sequencing"
Blogs
BBTools for bioinformatician !
BBMap.sh Mapping Nanopore reads BBMap.sh has a length cap of 6kbp....nbsp; Code: $ randomreads.sh ref=genome.fasta out=reads.fq len=100 re...sh gains the ability to simulate metagenomes. coverage=X will automa...nbsp; Code: $ randomreads.sh ref=genome.fasta...2268 days ago
Popular bioinformatics educational resources !
Followings are the list of popular bioinformatics educational resources Bii.a-star.ed...ology, Finland. Ornl.gov/sci/techresources/Human_Genome/education/education.shtml A...esource for introductory information on the Human Genome Projec...2190 days ago
- LiftOver is a necesary step to bring all genetical analysis to the same reference...ftOver can have three use cases: (1) Convert genome position from one genome assembly to another genome as...r from one build to another (3) Convert both genome positi...
2158 days ago
- Download this https://github.com/trinityrnaseq/trinityrnaseq/releases/tag/Trinity-v2.6.6 ➜ cd trinityrnas...eter **, this functionality continues to be under development) # # --genome_guided_bam :genome guided...
2131 days ago
List of motif discovery tools !
In genetics, a sequence motif is a nucleotide or amino-acid sequence pattern that is widespread and has, or is...s. PEDANT -- Protein Extraction, Description and ANalysis Tool Conduct genome wide f...1991 days ago
CANU genome assembly parameters !
Choose the appropriate parameters to run Canu and run it. The assembly will take about...-p \ -d \ genomeSize=[g|m|k] \...canu -p test_asmbl \ -d asm_test3 \ genomeSize=2m...1943 days ago
List of tools frequently used while genome assembly
List of tools frequently used while genome assembly: I have used the following assemblers Spades (v. 3.10.1)...8) Nanopolish (v. 0.8.3) I have used the following tools to assess genome assemb...1928 days ago
Software for genome assembly !
List of bioinformatics tools/Software Website References for genome assembly: 1 Falcon https://github.com/PacificBiosciences/pb-assembly 2 Canu assembler http://canu.readthedocs.io...1342 days ago
10 NGS services companies around the globe !
...sequencing services including genomes, targeted (re)-sequencing, h...mes, metagenomes, regulomes, pre-sequencing, NGS barcode labels, a...n sequencing services such as whole genome, de novo, exome, target...Popular mentions – MedGenome (India), DNA Link, Inc. (South Korea...1257 days ago
Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-based assembly and variant calling...algorithm that leverages a pangenome reference built from haplotype-resolved genome assemblies in conjunction wit...iptome data (Richard Kuo @GenomeRIK)● pbaa (PacBio A...long transcriptomic reads to a genome, guide...989 days ago
