Using Interval Trees to Query Genome Annotations by Position
To work on query related to overlapping genomic features: use IntervalTree python pkg http://informatics.malariagen.net/2011/07/07/using-interval-trees-to-query-genome-annota...3550 days ago
Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad This is an iOS app that allows...p/geneindex/id319769866?mt=8 Genome Voyager: iPad Gain first han...sease by analyzing cases with whole genome sequencing data that ha...arning purposes. Visualize whole human genome sequencing data i...3542 days ago
List of Biotechnology Research Laboratory, University, and Centre in India
DEPARTMENT OF BIOTECHNOLOGY Centre For DNA Fingerprinting And Diagnostics (CDFD), Hyderabad ( Institute of B...ar National Institute Of Immunology, New Delhi National Centre For Plant Genome Resear...2572 days ago
A guide for complete R beginners !
This tutorial is intended to introduce users quickly to the basics of R, focusing on a few common tasks that biologists need to perform some basic analysis: &n...3362 days ago
Software packages for next gen sequence analysis
...ment of Nucleotide Databases. Whole genome alignments to a reference gen...modular system for the rapid whole genome alignment of finished o...na reads to a FASTA reference genome. By Andrew D. Smith and Zheny...ALLPATHS: De novo assembly of whole-genome shotgun microreads. ALL...3244 days ago
Comprehensive list of visualization tools for biological pathways
The study of biological pathways is a key to understand the different processes inside a cell: proteins ex...azusa.or.jp/ KEGG Atlas Interactive Kyoto Encyclopedia of Genes and Genomes pathways http://www.genome.jp/keg...2288 days ago
2715 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...gzipped or not; no reference genome required; read pairs can be g...aneuploid tumor samples using whole genome sequencing data”...for analysis of targeted- and whole genome re-sequencing projects”; depen...alf, CNV file -cnv Reference genome: -refgene (created in MATLAB, GISITI...2910 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches of highly repetitive...ve been copied to another region of the genome.Interspersed RepeatsProcessed...s which have been reintegrated into the genome with t...2212 days ago
2870 days ago