2141 days ago
Check if your coputer ready to use BioPerl
#!/usr/bin/perl use strict; use warnings; #bioperl example code use strict; use warnings; #make the bioperl module (class) accessible to your program use Bio::Seq; print"ok - ready to use Bio::Seq";2913 days ago
A multilayer perceptron (MLP) neural network in Perl
#!/usr/local/bin/perl -w #################################################### #M...near output neuron #To include an input bias create an #extra input in the training data #and set to 1 ####...2912 days ago
2906 days ago
2690 days ago
BASH script for SelfBLAST a genome
#!/bin/bash #self BLAST a genome -- Expecting you have blast and samt...USER; Me creating creating blastDB named $MYDB for you"; makeb...echo "Extracting the sequence $2 for you from $FASTAFILE -- MAKE SUR...2648 days ago
Plot the density of genes in R
#column1 = chromosome name and column2 = start position of the gene # check if ggplot2 i...e { install.packages("ggplot2") library(ggplot2) } # import a text file with gen...2281 days ago
Estimate Genome Size with Jellyfish and R
jellyfish count -t 8 -C -m 19 -s 5G -o 19mer_out --min-qual-char=? /common/Tutorial/Genome_estimation/sample_read_1.fastq /common/Tutorial...2242 days ago
Installing Busco version 4.0.6
(base) jit@jit-HP-Pro-3335-MT: conda install -c bioconda -c conda-forge...1001 419 KB conda-forge make-4.3...03 64 KB conda-forge r-withr-2.2.0...64::lp_solve-5.5.2.5-h14c3975_1001 make...ridislite-0.3.0-r36h6115d3f_1003 r-withr...1449 days ago
2148 days ago