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Five unique traits of effective computational biologist
...as well as biological skill, experience, and knowledge to pro...grammer learn Perl's regular expression when they started a p...logy which can assist you to explain the result and understan...ing — you must also be excited about your research, the...3964 days ago
How to install Perl modules manually, using CPAN command, and other quick ways
...owing error message. In this example, XML::Parser Perl module...ou wish to download. In this example, let us search, download...usr/lib/perl5/5.10.0/i386-linux-thread-multi/usr/lib/perl5/5....sp; : perl-ExtUtils-MakeMaker &n...3964 days ago
Well designed regular expression cheat sheet
In our computational biology work, we mostly play with DNA or AA string. For string based programming work this regular expression cheat sheet is really helpful. Keep it handy.3964 days ago
List of popular bioinformatics software/tools
In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.3959 days ago
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Regular Expression Cheat Sheet
The Regular Expression are the sole of Perl language, and for bioi...We did not find any good and user friendly regular expression cheat sheet, hence write our own cheat sheet. The Regular Expressions Cheat Sheet, a quick...3967 days ago
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Bio++ : C Language libraries for your biological need
...with an Operating System (Unix) that was actually largely wr...s. C++ has its basis in C - extending it by supporting featu...at can help you to solve approximately all problems related w...thods: (U/W)PGMA, NJ, BioNJ.Maximum likelihood (NNI, includin...3962 days ago
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Bioinformatics: Introduction to PERL
...troduction to programming using Perl. By the end of this course, attendees should be able to write simple Perl programs and to understand more complex Perl programs written by othe...3965 days ago
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Bioinformatician become producer/director !!!
If a Bioinformatician starts producing Hindi Bollywood movies, names will be like this.... BLAST : Eak khoj Munna Bhai Promoter Gene se Genome tak. Maine BLAST...3933 days ago
Perl Poem: Parse it in both Perl and English!
...of the reigning Perl Poet, Sharon Hopkins. She has written quite a few Perl poems, as well as a paper on Perl poetry that she presented at the Usenix Winter 1992 Technical Confere...3933 days ago
Computational Biology in the 21st Century: Making Sense out of Massive Data
...y Afternoon Lectures Description: The last two decades have seen an exponential increase in genomic...trip advances in computing power to perform current methods of analysis. Extracting new science from thes...3916 days ago
Daniel Reda - An Introduction to Biotechnology and Bioinformatics
Daniel Reda, co-Chair of the Biotechnology and Bioinformatics track at Singularity University, introduces the key concepts and breakthroughs in biotechnology and bioinformatics. Filmed during the November 2009 Executive Program at Singularity University.3932 days ago
Install BLAST in Ubuntu/Linux and Window !
...installation conda install -c bioconda blast #Windows installation First: Download ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.7.1/ncbi-blast-2.7.1+-win64.exe with your web browser. #...1161 days ago
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Which of the following programming language is best for a bioinformatics beginner?
...mming language which is compatible with most bioinformatics tools or software. I basically want to do de-novo assembly, map reads, align reads, and expression analysis. Recommendat...3545 days ago
Which math/statistics programming language/application do you most frequently use in bioinformatics?
I'm doing a bit more statistical analysis on some bioinformatics things lately, and I'm curious if there are any programming languages that are particularly good for this NGS computation. What suggestions do you guys have? Are there any languages that have exceptionally good libraries?3540 days ago
Tryst with a Bioinformatician # Dr Altan Kara
...an for clearly setting out both his expectations of people that join...Biology/Bioinformatics? It's flexibility. As well known, there...life till now? So far I do not experience any memorable scienti...ll be retired, what would you tell next generation bioinformaticians...2376 days ago
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Comment on "Benchmarking Perl Module !"
...mance of the module in terms of its execution time and memory usage....ite a simple benchmark program that exercises the functionality of y...de you want to benchmark. Here's an example of a benchmark subroutin...es writing a benchmark program that exercises the functionality of t...430 days ago
Comment on "A quick guide to Phred scaling"
...the more confident we are in the base call. For example, a Phred score of 10 cor...ld decrease in the probability of an error. For example, a Phred score of 20 cor...cter code equal to the Phred score plus 33. For example, a Phred score of 20 is...430 days ago