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Awesome perl frameworks, libraries and software - PART 1
...jo - A Catalyst & DBIx::Class powered Wiki. xslate/...- Perl module to create Excel XLSX files. plainblack/webgui&...menu generator for the Openbox Window Manager. rjbs/App-Cmd...;- Evernote SDK for Perl elmex/Construder - A 3D Game w...2504 days ago
- ...rking on your homework. Excel File Quite frequently, the sample data is in Excel format, and needs to...p;= loadWorkbook("mydata.xls") > df =&...data table can resides in a text file. The cells inside the t...
2503 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
...n terms of their states, for example: "hair present" vs. "hai...s. clade -- A monophyletic taxon; a group of organisms which...evolution of the clade. For example, "presence of hair" is a...sely related to each of the taxa under consideration than any...2476 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...ftware/sailfish/ Salmon Quantification of the expression of transcripts using...VA Genotyping of known SNPs (dbSNP and Affymetrix's Genome-Wide Human SNP Array...ams/NGS-MC/NGS-MC.html Species identification/taxonomic profiling CLARK Taxon...2385 days ago
- ...r v3.10.1 Usage: /usr/local/SPAdes-3.10.1-Linux/bin/spades.py [options] -o &l...t;#> = 1,2,..,9; <or> = fr, rf, ff) --nxmate<#>-1 <filename...RAM limit for SPAdes in Gb (terminates if exceeded)...
2365 days ago
Single Cell RNAseq data analysis tutorial !!
...cies Useful for quantifying expression signatures from ensem...ly development studies, complex tissues (brain) Does no...cell RNA-Seq data http://biorxiv.org/content/early/2016/09/0...linear Inference of Cellular Expression Relationships (SLICER...2365 days ago
- ...major steps in RNA-seq data analysis, including experimental design, quality con...script levels, visualization, differential gene expression, alternative splicing...mma and edgeR Differential gene and transcript expression analysis of RNA-seq e...
2365 days ago
Edit distance application in bioinformatics !
...allows only transposition. use Text::Levenshtein qw(distance);...between two strings. Here's just a selection. Text::LevenshteinXS and ...applies different weights to each edit type. Text::Brew is an implementat...2355 days ago
Converting BLAST output into CSV
...omething. As with most programs that run on UNIX, the text output is in some specific f...tutorial by converting the BLAST output in out.txt into a spreadsheet format, u...on /root/ngs-scripts/blast/blast-to-csv.py out.txt This outputs a spread...2351 days ago
Tools for bacterial whole genome annotation
...as good as RAST, and you will need several extra steps if you want to do&nb...of different annotations of single genomes. The extended annotation assigns puta...tween them; (ii) IMAGE uses paired-end reads to extend contigs and close gaps wi...2346 days ago
