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Users
Interests: Exploring Gene Networks3920 days ago
3916 days ago
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Blogs
Five unique traits of effective computational biologist
...as well as biological skill, experience, and knowledge to pro...grammer learn Perl's regular expression when they started a p...logy which can assist you to explain the result and understan...ing — you must also be excited about your research, the...3954 days ago
How to install Perl modules manually, using CPAN command, and other quick ways
...owing error message. In this example, XML::Parser Perl module...ou wish to download. In this example, let us search, download...usr/lib/perl5/5.10.0/i386-linux-thread-multi/usr/lib/perl5/5....sp; : perl-ExtUtils-MakeMaker &n...3953 days ago
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Bookmarks
Well designed regular expression cheat sheet
In our computational biology work, we mostly play with DNA or AA string. For string based programming work this regular expression cheat sheet is really helpful. Keep it handy.3953 days ago
List of popular bioinformatics software/tools
In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.3949 days ago
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Files
- In an attempt to find a good Linux reference for bioinformatician and BOL readers, I was unsuccessful at finding a decent one on the Internet. So, we decided to make a cheat sheet for biological programmers.
3956 days ago
Regular Expression Cheat Sheet
The Regular Expression are the sole of Perl language, and for bioi...We did not find any good and user friendly regular expression cheat sheet, hence write our own cheat sheet. The Regular Expressions Cheat Sheet, a quick...3956 days ago
- +28 more Files
Discussion topics
- Why bioinformatician still using Perl when Python is easy to code, good in ReXp and faster than perl?
3954 days ago
- Like in case of plant genomes where nature of genome is too complex and huge in size to accomplish complete de novo assembly by current sequencing technology. What would be alternate solution? Can we live in reference free world?
3948 days ago
- +4 more Discussion topics
Pages
Bio++ : C Language libraries for your biological need
...with an Operating System (Unix) that was actually largely wr...s. C++ has its basis in C - extending it by supporting featu...at can help you to solve approximately all problems related w...thods: (U/W)PGMA, NJ, BioNJ.Maximum likelihood (NNI, includin...3951 days ago
- ..., general purpose object-oriented programming language that combines syntax inspired by Perl with Smallta...uby/QuickRef.html Ruby Annotationhttp://www.w3.org/TR/ruby/ Ruby in Linux Journalshttp://www.linuxjourn...
3951 days ago
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Top-level pages
- ...nal tools and approaches for expanding the use of biological,...n the genetic code, but also experimental results from variou...st two–hybrid screens, expression arrays, systematic ge...embrane proteins are usually excluded from structural genomic...
3950 days ago
- ...quencing, so called the “high-throughput next generation sequencing”...decreasing genome sequencing cost and desire to explore and understand biologica...ioinformatician/ biological programmers need to expertise in any one one the pro...
3951 days ago
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Wire posts
News
- ...ass for people with a little bit of programming experience who want to learn Pyt...ten materials, lecture videos, and lots of code exercises to practice Python cod...on to people who have just a little programming experience. Find more @ ht...
3955 days ago
Bioinformatics: Introduction to PERL
...troduction to programming using Perl. By the end of this course, attendees should be able to write simple Perl programs and to understand more complex Perl programs written by othe...3954 days ago
- +171 more News
Opportunity posts
- ...Infrastructures for continuous-context-sensitive Systems” offers th...d of employment is governed by the Fixed Term Research Contracts Act...irements: Applicants should have an excellent academic record, and h...on their progress so far and on the expected date of completion of t...
3951 days ago
- ...along with list of publications and duration of experience on the e-mail ID(s) a...Ph.D. in Bioinformatics. Desirable: Working experience in algorithm developm...iology /Virology /Botany. Desirable: Working experience in the area of plant...
3948 days ago
- +529 more Opportunity posts
ResearchLabs posts
- ...(mainly Saccharomyces cerevisae) to environmental stresses triggered by oxidative agents, heavy metals,...scriptomics, proteomics, metabolomics and genetics) generate a wealth of experimental data, which are pro...
3923 days ago
- ...e effectively use of vast and diverse amounts of biomedical knowledge. We are particularly interested in understanding how the response to chemical exposure is modulated by genetic...
3951 days ago
- +103 more ResearchLabs posts
Fun
Bioinformatician become producer/director !!!
If a Bioinformatician starts producing Hindi Bollywood movies, names will be like this.... BLAST : Eak khoj Munna Bhai Promoter Gene se Genome tak. Maine BLAST...3922 days ago
Perl Poem: Parse it in both Perl and English!
...of the reigning Perl Poet, Sharon Hopkins. She has written quite a few Perl poems, as well as a paper on Perl poetry that she presented at the Usenix Winter 1992 Technical Confere...3922 days ago
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Video
Computational Biology in the 21st Century: Making Sense out of Massive Data
...y Afternoon Lectures Description: The last two decades have seen an exponential increase in genomic...trip advances in computing power to perform current methods of analysis. Extracting new science from thes...3905 days ago
Daniel Reda - An Introduction to Biotechnology and Bioinformatics
Daniel Reda, co-Chair of the Biotechnology and Bioinformatics track at Singularity University, introduces the key concepts and breakthroughs in biotechnology and bioinformatics. Filmed during the November 2009 Executive Program at Singularity University.3921 days ago
- +53 more Video
Bio-Scripts
Install BLAST in Ubuntu/Linux and Window !
...installation conda install -c bioconda blast #Windows installation First: Download ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.7.1/ncbi-blast-2.7.1+-win64.exe with your web browser. #...1150 days ago
- ...ut the value of the variable and its length my $DNAlength = length($modifiedDNA); print "Modified DNA: $modifiedDNA has length $DNAlength\n"; #extract the second codon in $mod...
2920 days ago
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Polls
Which of the following programming language is best for a bioinformatics beginner?
...mming language which is compatible with most bioinformatics tools or software. I basically want to do de-novo assembly, map reads, align reads, and expression analysis. Recommendat...3534 days ago
Which math/statistics programming language/application do you most frequently use in bioinformatics?
I'm doing a bit more statistical analysis on some bioinformatics things lately, and I'm curious if there are any programming languages that are particularly good for this NGS computation. What suggestions do you guys have? Are there any languages that have exceptionally good libraries?3530 days ago
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Tryst
Tryst with a Bioinformatician # Dr Altan Kara
...an for clearly setting out both his expectations of people that join...Biology/Bioinformatics? It's flexibility. As well known, there...life till now? So far I do not experience any memorable scienti...ll be retired, what would you tell next generation bioinformaticians...2365 days ago
Groups
Perl(Practical Extraction and Reporting Language) is a family of high-level, general-purpose, i.... Perl was originally developed by Larry Wall in 1987 as a general-purpose Unix scripting language to make re...3956 days ago
...ming language. It has efficient high-level data structures and a simple but effective approach to object-oriented programming. Python’s elegant syntax and dynamic typing, together...3949 days ago
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Tags
- The Vicoso group investigates how sex chromosomes evolve over time, and what biological forces are driving their patterns of differentiation. The Vicoso group is interested in understanding several aspects of the biology of sex chromosomes, and the evolutionary processes that shape their pecul...
Tags: Beatriz, Vicoso, Sex, Chromosome, Evolution, X, Genome
826 days ago
Comments
Comment on "Benchmarking Perl Module !"
...mance of the module in terms of its execution time and memory usage....ite a simple benchmark program that exercises the functionality of y...de you want to benchmark. Here's an example of a benchmark subroutin...es writing a benchmark program that exercises the functionality of t...419 days ago
Comment on "A quick guide to Phred scaling"
...the more confident we are in the base call. For example, a Phred score of 10 cor...ld decrease in the probability of an error. For example, a Phred score of 20 cor...cter code equal to the Phred score plus 33. For example, a Phred score of 20 is...419 days ago
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