Results for "algorithm"
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Comment on "Tools for RNA classification"
...a comprehensive resource for RNA classification. RNAcode: RNAcode is a machine learning-based tool that uses a support vector machine (SVM) algorithm to classify RNA sequences. It...424 days ago
Comment on "URMAP, an ultra-fast read mapper"
...or threads to use for mapping. Default is the number of CPU cores or 10, whichever is smaller. The -veryfast option specifies a variant mapping algorithm which is ~3x faster but somew...1286 days ago
Comment on "Sibelia: A comparative genomics tool"
...ence, such blocks are used as input for MGRA algorithm, for example. To get such ou...oundaries correction --------------------- Algorithm of "Sibelia" depends on prese..."loose" cmd option. As you may notice, the algorithm relies on exact K-mers shared...1288 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...two times in comparison with SatsumaSynteny2, another popular tool. Such high efficiency was attained by implementing a mathematically effective algorithm using C++. https://phys.org/...1414 days ago
Comment on "NGMLR: long-read mapper designed to align PacBio or Oxford Nanopore"
....s3.amazonaws.com/67132304/4a52fe26-7859-11e8-8dd8-f5fdd363cfef?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Cr....s3.amazonaws.com/67132304/4a52fe26-7859-11e8-8dd8-f5fdd363cfef?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Cr...1556 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...-friendly tool to reconstruct synteny blocks between (complex) genomes harboring different levels of synteny conservation. Despite a very simple algorithm, the reconstruction is highly...1597 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
➜ LAMSA git:(master) ./lamsa aln Usage: lamsa aln [options] <ref.fa> <read.fa/fq> Algorithm options: -t --thread [INT] Number of threads. [1] -l --seed-len [INT] Length...2125 days ago
Comment on "Installing Perl environment on Linux"
...ttp://www.cpan.org/authors/id/N/NE/NEILB/Text-Diff-1.45.tar.gz ... OKConfiguring Text-Diff-1.45 ... OK==> Found dependencies: Algorithm::Diff--> Working on Algorithm::DiffFetching http://www.cpan...2129 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...minimizer-window 1' Alignment options: -a, --alg STR Specifies which algorithm should be used for alignment....proach STR Additional alignment approaches. Changes the way alignment algorithm is applied. Options are: norm...2295 days ago
- ...wing is the assembly outline. First, it constructs contigs using the algorithm based on de Bruijn graph. Se...--------------------------------- Constructs contigs using the algorithm based on de Bruign graph....
2802 days ago
