SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alignments, and then keeps only the parts that are orthologous, i.e. following the conserved order and orientation of features, such as protein coding genes, non-coding genes, or neutral sequences. Satsuma does no...Tags: Bioinformatics, NGS, Sequence, Alignment, Synteny, Comparative genomics, Genomics
2907 days ago
Tags: Bioinformatics, MAF, mafTools, Alignment, Multiple
2898 days ago
Tags: Blastn, BLAST, Nucleotide, Alignment, Database, NR, Contig, NGS
2869 days ago
Tags: Bioinformatics, Analysis, Alignment, Synteny, Spines
2708 days ago
Tags: Bioinformatics, Rearrangement, Mauve, Tool, Alignment
1964 days ago
Tags: Bioinformatics, Alignment, NGS, Reads, YAHA
2655 days ago
Tags: Bioinformatics, Alignment, NGS, Reads, SpeedSeq
2655 days ago
Tags: Bioinformatics, Analysis, Assembly, Genome, Harvest, Alignment, Tools
2644 days ago
FSA: Fast Statistical Alignment
FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequences. Much as distance-based phylogenetic reconstruction methods like Neighbor-Joining build a phylogeny using only pairwise divergence estimates, FS...Tags: Bioinformatics, FSA, Fast, Statistical, Alignment, DNA, Sequence
2638 days ago