Results for "alignments"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...is an automated system for identifying and displaying genome synteny alignments. The genomes may be represent...Browser) is a generic sequence comparison tool for visualizing genome alignments both within and between speci...2608 days ago
Software and Tools to detect structure variation with long reads !!
...tural variation caller using third generation sequencing (PacBio or Oxford Nanopore). It detects all types of SVs using evidence from split-read alignments, high-mismatch regions, and c...2606 days ago
BBTools for bioinformatician !
...ike microRNAs. Important note about BBMap alignments BBMap is always nondetermi..., it will output a sam file with exactly 100 alignments - one per ref sequence, using...wise) from NGS data This does NOT require alignments so it should prove more usefu...2269 days ago
List of motif discovery tools !
...tures. DBAli -- A Database of Structure Alignments Mine the protein structure s...in protein sequences. MALISAM -- Manual ALIgnments for Structurally Analogous Mo...ting Functional Residues in Protein Sequence Alignments Predict functional sites in...1991 days ago
Understanding reads mapping and flags !
...near alignment. Typically, one of the linear alignments in a chimeric alignment is co...nment that is represented as a set of linear alignments that do not have large overla...repeats. Only one of the multiple read alignments is considered primary, a...1835 days ago
Frequently used bioinformatics tools for viral genome analysis !
...aj-Grabysz, A. & Grabowski, S. BMC Bioinformatics 14, 160 (2013). Kraken: Kraken: ultrafast metagenomic sequence classification using exact alignments. Wood, D. E. & Salzberg,...1045 days ago
Illumina based assembly pipeline steps !
...ad QC (FastQC) Adapter trimming (fastp) Removal of host reads (Kraken 2; optional) Variant calling Read alignment (Bowtie 2) Sort and index alignments (SAMtools) Primer sequence r...875 days ago
Useful Bioinformatics Analysis Tools !
... 2015; 10(4):1–23, CoMSA Compressor of multiple sequence alignments of proteins. • &nb...cz, S., QuickProbs 2: towards rapid construction of high-quality alignments of large protein families,&nb...861 days ago
List of comparative genomics resources !
...a genomes. ECR Browser -- A Tool for Visualizing and Accessing Data from Comparisons of Multiple Vertebrate Genomes Access to whole genome alignments of human, mouse, rat and fish...675 days ago
